MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-96-P2o1

Family name MIR-96 (all species)
Seed UUGGCAA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-182
Paralogues Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Efe-Mir-96-P2o  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2o1)		 Mir-96-P2o1 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Mir-96-P1o1 NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Mir-96-P3o1 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAUCAGAUGAAGAAGCGGGCGGACUGUGUUUGGCAAUGGUAGAACUCACACUGGCCAGAGAGCUCUCCGGGGGUUCUAGACUUGCCAAUUACAGUCCCACCCCGCAAAGCUCCACGCUUCU
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Structure
        10        20          30        40        50        60 
UGGAUCAGAUGAAGAAGC   C--|       U       UGG        ACACUGGCCAG 
                  GGG   GGACUGUG UUGGCAA   UAGAACUC           \
                  CCC   CCUGACAU AACCGUU   AUCUUGGG           A
UCUUCGCACCUCGAAACG   CAC^       U       CAG        GGCCUCUCGAG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-96-P2o1_5p
mirBase accessionMIMAT0019490
Sequence 
0- UUUGGCAAUGGUAGAACUCACACU -24
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Star sequence

Pma-Mir-96-P2o1_3p* (predicted)
mirBase accessionNone
Sequence 
42- GGGUUCUAGACUUGCCAAUUA -63
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