Mir-96-P2p

MirGeneDB ID

Cbr-Mir-96-P2p

Family name

MIR-96 (all species)

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-790-2

Paralogues

Cbr-Mir-96-P2q Cbr-Mir-96-P3

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Bilateria

Genome context
(CB4)

IV: 6048235-6048292 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2p)

Mir-96-P3 IV: 6041106-6041167 [+] Ensembl
Mir-96-P2p IV: 6048235-6048292 [+] Ensembl
Mir-96-P2q IV: 6048856-6048920 [+] Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

UUCUCUCUUCCAGACGGUCCCUUCCGACUGCUUGGCACUCGCGAACACCGCGGUCGAAGUUACUCGCGGAGUUAGCCAGUGUCAACCAGAUGGAUGCUCGAGACUUCCUUUUUGAAUG

Get precursor sequence

Structure

        10        20          30        40        50        
UUCUCUCUUCCAGACGGUCCCU--|   A   C        C  G   A     GUCGA 
                        UCCG CUG UUGGCACU GC AAC CCGCG     A
                        AGGU GAC AACUGUGA CG UUG GGCGC     G
GUAAGUUUUUCCUUCAGAGCUCGU^   A   C        C  A   A     UCAUU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Mature sequence

Cbr-Mir-96-P2p_5p

mirBase accession

MIMAT0004292

Sequence

0- CUUGGCACUCGCGAACACCGCG -22

Get sequence

Star sequence

Cbr-Mir-96-P2p_3p*

mirBase accession

None

Sequence

36- CGGAGUUAGCCAGUGUCAACCA -58

Get sequence