MirGeneDB 3.0

MirGeneDB ID

Cbr-Mir-96-P2p

Family name MIR-96 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-790-2
Paralogues Cbr-Mir-96-P2q  Cbr-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Eca-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tur-Mir-96-P2  War-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) C. briggsae
Node of Origin (family) Bilateria
Genome context
(CB4)
IV: 6048235-6048292 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2p)
Mir-96-P3 IV: 6041106-6041167 [+] Ensembl
Mir-96-P2p IV: 6048235-6048292 [+] Ensembl
Mir-96-P2q IV: 6048856-6048920 [+] Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)
UUCUCUCUUCCAGACGGUCCCUUCCGACUGCUUGGCACUCGCGAACACCGCGGUCGAAGUUACUCGCGGAGUUAGCCAGUGUCAACCAGAUGGAUGCUCGAGACUUCCUUUUUGAAUG
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Structure
        10        20          30        40        50        
UUCUCUCUUCCAGACGGUCCCU--|   A   C        C  G   A     GUCGA 
                        UCCG CUG UUGGCACU GC AAC CCGCG     A
                        AGGU GAC AACUGUGA CG UUG GGCGC     G
GUAAGUUUUUCCUUCAGAGCUCGU^   A   C        C  A   A     UCAUU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Mature sequence

Cbr-Mir-96-P2p_5p

mirBase accessionMIMAT0004292
Sequence
0- CUUGGCACUCGCGAACACCGCG -22
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Star sequence

Cbr-Mir-96-P2p_3p*

mirBase accessionNone
Sequence
36- CGGAGUUAGCCAGUGUCAACCA -58
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