Mir-96-P2e

MirGeneDB ID

Ebu-Mir-96-P2e

Family name

MIR-96 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Ebu-Mir-96-P3e Ebu-Mir-96-P3f

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

Node of Origin (family)

Genome context
(Eburgeri_3)

FYBX02009823.1: 3449100-3449160 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2e)

Mir-96-P2e FYBX02009823.1: 3449100-3449160 [-] UCSC Ensembl
Mir-96-P1e FYBX02009823.1: 3449915-3449976 [-] UCSC Ensembl
Mir-96-P3e FYBX02009823.1: 3458408-3458467 [-] UCSC Ensembl

Seed

UUGGCAA

Precursor
(pre-Mir +30nt flank)

AGAAAGAGAGGGGAAGACGCCUGGACAGUUUUUGGCAAUGGUAGAACUCACACGGGCAGCUUUGGGCUCGUGGUUCUAGACUUGCCAAAAACGGUUCAGGCGGUUUUUCAACGUUUCACAC

Get precursor sequence

Structure

        10          20        30        40        50        60 
AGAAAGAGAGGGGAAGA--|        A           UGG      UCA     GCAGC 
                   CGCCUGGAC GUUUUUGGCAA   UAGAAC   CACGG     U
                   GCGGACUUG CAAAAACCGUU   AUCUUG   GUGCU     U
CACACUUUGCAACUUUUUG^        G           CAG      ---     CGGGU 
 .       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ebu-Mir-96-P2e_5p

mirBase accession

None

Sequence

0- UUUGGCAAUGGUAGAACUCACACGG -25

Get sequence

Star sequence

Ebu-Mir-96-P2e_3p* (predicted)

mirBase accession

None

Sequence

39- GUGGUUCUAGACUUGCCAAAAA -61

Get sequence