Mir-96-P3c-v1

MirGeneDB ID

Xla-Mir-96-P3c

Family name

MIR-96 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-96-P1c Xla-Mir-96-P1d Xla-Mir-96-P2c Xla-Mir-96-P2d Xla-Mir-96-P3d-v1

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 77405965-77406026 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3c-v1)

Mir-96-P3c-v1 NC_030728.1: 77405965-77406026 [+] UCSC Ensembl
Mir-96-P3c-v2 NC_030728.1: 77405966-77406025 [+] UCSC Ensembl
Mir-96-P1c NC_030728.1: 77406980-77407043 [+] UCSC Ensembl
Mir-96-P2c NC_030728.1: 77410428-77410492 [+] UCSC Ensembl

Variant

Xla-Mir-96-P3c-v1

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

UUGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGACCACGU

Get precursor sequence

Structure

        10         20         30          40        50        60
UUGCUGGGUGAGCAUCCC-  -         G      AC--|    GA       GUGAAAA 
                   UC CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                   AG GACGAGACA AUACCG    ACCAU  UAAGUGA       A
UGCACCAGAACACCAAGAA  A         A      GGAU^    --       CUAAAAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-96-P3c-v1_5p

mirBase accession

None

Sequence

0- UAUGGCACUGGUAGAAUUCACU -22

Get sequence

Star sequence

Xla-Mir-96-P3c-v1_3p*

mirBase accession

None

Sequence

40- UGAAUUACCAUAGGGCCAUAAA -62

Get sequence

Variant

Xla-Mir-96-P3c-v2

Seed

UGGCACU

Precursor
(pre-Mir +30nt flank)

UGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGACCACG

Get precursor sequence

Structure

        10          20        30          40        50         
UGCUGGGUGAGCAUCCC-  -         G      AC--|    GA        UGAAAA 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
GCACCAGAACACCAAGAA  A         A      GGAU^    --        UAAAAC 
.       110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-96-P3c-v2_5p

mirBase accession

None

Sequence

0- AUGGCACUGGUAGAAUUCACUG -22

Get sequence

Star sequence

Xla-Mir-96-P3c-v2_3p*

mirBase accession

None

Sequence

38- GUGAAUUACCAUAGGGCCAUAA -60

Get sequence