Mir-96-P3

MirGeneDB ID

Lgi-Mir-96-P3

Family name

MIR-96 (all species)

Seed

AUGGCAC

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-263b

Paralogues

Lgi-Mir-96-P1h Lgi-Mir-96-P1i Lgi-Mir-96-P2

Orthologues

Aae-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cgi-Mir-96-P3 Cin-Mir-96-P3 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Csc-Mir-96-P3w Csc-Mir-96-P3x Dan-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dre-Mir-96-P3a-v2 Dsi-Mir-96-P3 Dya-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Gmo-Mir-96-P3a-v1 Gmo-Mir-96-P3a-v2 Hme-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3a-v2 Mal-Mir-96-P3b-v1 Mal-Mir-96-P3b-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Xla-Mir-96-P3c-v1 Xla-Mir-96-P3c-v2 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Lotgi1)

LOTGIsca_71: 756862-756922 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3)

Mir-96-P3 LOTGIsca_71: 756862-756922 [+] Ensembl
Mir-96-P2 LOTGIsca_71: 757688-757746 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAUGUCAUCGUAAACCGGUCCGACAGUGAAUGGCACUGGUAGAAUUCACGGUGUAAACCUUGUGUUCCGUGGUCUUCCGGUGUCAUACAUUGUUAGUCGGAAGUCAGCUUAUCAAGAAA

Get precursor sequence

Structure

        10        20            30        40        50        60 
AAAAUGUCAUCGUAAACCGG      ----|   A          U   AU      UGUAAAC 
                    UCCGAC    AGUG AUGGCACUGG AGA  UCACGG       \
                    AGGCUG    UUAC UACUGUGGCC UCU  GGUGCC       C
AAAGAACUAUUCGACUGA--      AUUG^   A          U   --      UUGUGUU 
 .       110         100        90        80          70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Lgi-Mir-96-P3_5p (predicted)

mirBase accession

MIMAT0009584

Sequence

0- AAUGGCACUGGUAGAAUUCACGG -23

Get sequence

Star sequence

Lgi-Mir-96-P3_3p* (predicted)

mirBase accession

None

Sequence

40- GUGGUCUUCCGGUGUCAUACA -61

Get sequence