Mir-96-P1i

MirGeneDB ID

Lgi-Mir-96-P1i

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-96a

Paralogues

Lgi-Mir-96-P1h Lgi-Mir-96-P2 Lgi-Mir-96-P3

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cgi-Mir-96-P1i Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

Mollusca

Node of Origin (family)

Bilateria

Genome context
(Lotgi1)

LOTGIsca_31: 795528-795586 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUUUCUUUGAUGCAAACUCUCUUGCUCCUACUUGGCACUGGCGGAAUAAUCACGUGAUAAAAUCAGUGAUUGUUACCUGGUGUCAAAAAGGAUUUUGAGAAAAAUCAACAGGCUCUUGC

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Structure

        10          20        30        40        50         
CUUUCUUUGAUGCAAAC--|   UUGC    AC       UG CGG        CGUGAU 
                   UCUC    UCCU  UUGGCAC  G   AAUAAUCA      A
                   AGAG    AGGA  AACUGUG  C   UUGUUAGU      A
CGUUCUCGGACAACUAAAA^   UUUU    AA       GU CA-        GACUAA 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Lgi-Mir-96-P1i_5p

mirBase accession

MIMAT0009575

Sequence

0- CUUGGCACUGGCGGAAUAAUCA -22

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Star sequence

Lgi-Mir-96-P1i_3p* (predicted)

mirBase accession

None

Sequence

38- AUUGUUACCUGGUGUCAAAAA -59

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