MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-96-P3

Family name MIR-96 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-183
Paralogues Ami-Mir-96-P1  Ami-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Asu-Mir-96-P3  Ava-Mir-96-P3y  Ava-Mir-96-P3z  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cli-Mir-96-P3-v1  Cmi-Mir-96-P3-v1  Cpi-Mir-96-P3-v1  Cpo-Mir-96-P3-v1  Csc-Mir-96-P3w  Csc-Mir-96-P3x  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dpu-Mir-96-P3  Dre-Mir-96-P3a-v1  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f  Eca-Mir-96-P3-v1  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Gga-Mir-96-P3-v1  Gja-Mir-96-P3-v1  Gmo-Mir-96-P3a-v1  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3b-v1  Mdo-Mir-96-P3-v1  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mmr-Mir-96-P3-v1  Mmu-Mir-96-P3-v1  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Neu-Mir-96-P3-v1  Oan-Mir-96-P3-v1  Ocu-Mir-96-P3-v1  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pau-Mir-96-P3g  Pau-Mir-96-P3h  Pbv-Mir-96-P3-v1  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rno-Mir-96-P3-v1  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Tni-Mir-96-P3b  Tur-Mir-96-P3  War-Mir-96-P3  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3d-v1  Xtr-Mir-96-P3-v1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709854.1: 28193883-28193944 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-96-P3-v1)		 Mir-96-P3-v1 NW_017709854.1: 28193883-28193944 [+] UCSC
Mir-96-P3-v2 NW_017709854.1: 28193884-28193943 [+] UCSC
Mir-96-P1 NW_017709854.1: 28194128-28194191 [+] UCSC
Mir-96-P2 NW_017709854.1: 28203096-28203160 [+] UCSC
Variant

Ami-Mir-96-P3-v1
Seed AUGGCAC
Precursor
(pre-Mir +30nt flank)		 
GCCUGGGGCGAACAUUACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACGCUAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACGAGGCCCUCG
Get precursor sequence
Structure
        10           20        30          40        50        60
GCCUGGGGCGAACAUUA---  C         G      AC--|    GA       GUGAAAA 
                    CU CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                    GA GACGAGACA AUACCG    ACCAU  UAAGUGA       A
GCUCCCGGAGCACCAAGAAA  -         A      GGAU^    --       CUAUCGC 
120       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Ami-Mir-96-P3-v1_5p
mirBase accessionMIMAT0038196
Sequence 
0- UAUGGCACUGGUAGAAUUCACU -22
Get sequence
Star sequence

Ami-Mir-96-P3-v1_3p*
mirBase accessionMIMAT0038197
Sequence 
40- UGAAUUACCAUAGGGCCAUAAA -62
Get sequence
Variant

Ami-Mir-96-P3-v2
Seed UGGCACU
Precursor
(pre-Mir +30nt flank)		 
CCUGGGGCGAACAUUACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACGCUAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACGAGGCCCUC
Get precursor sequence
Structure
        10          20        30          40        50         
CCUGGGGCGAACAUUAC-  -         G      AC--|    GA        UGAAAA 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
CUCCCGGAGCACCAAGAA  A         A      GGAU^    --        UAUCGC 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-96-P3-v2_5p
mirBase accessionMIMAT0038196
Sequence 
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Star sequence

Ami-Mir-96-P3-v2_3p*
mirBase accessionMIMAT0038197
Sequence 
38- GUGAAUUACCAUAGGGCCAUAA -60
Get sequence