Mir-96-P3z

MirGeneDB ID

Ava-Mir-96-P3z

Family name

MIR-96 (all species)

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-96-o1 Ava-Mir-96-o2 Ava-Mir-96-P3y

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1

Node of Origin (locus)

A. vaga

Node of Origin (family)

Bilateria

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075497.1: 4909754-4909816 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3z)

Mir-96-o1 CP075497.1: 4909602-4909660 [+] Ensembl
Mir-96-P3z CP075497.1: 4909754-4909816 [+] Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

UAUCAUAAUGAGAAAUGCUCAGGUACGGUCAAUGGCACACAAUUUGAAGACGGUUGAUAACUACAGACUCCGUAUUUAUAUGUGUGCCACCAAUCGAUCUGAAGUCAAUCUACAACGAAGAGC

Get precursor sequence

Structure

        10           20        30        40        50        60 
UAUCAUAAUGAGAAAUGC---|     A    CAA         AUU    G    UUGAUAA 
                     UCAGGU CGGU   UGGCACACA   UGAA ACGG       C
                     AGUCUA GCUA   ACCGUGUGU   AUUU UGCC       U
CGAGAAGCAACAUCUAACUGA^     -    ACC         AU-    A    UCAGACA 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Ava-Mir-96-P3z_5p

mirBase accession

None

Sequence

0- AAUGGCACACAAUUUGAAGACGG -23

Get sequence

Star sequence

Ava-Mir-96-P3z_3p*

mirBase accession

None

Sequence

41- GUAUUUAUAUGUGUGCCACCAA -63

Get sequence