MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-96-P3a

Family name MIR-96 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-183
Paralogues Dre-Mir-96-P1a  Dre-Mir-96-P2a 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Ami-Mir-96-P3-v1  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cli-Mir-96-P3-v1  Cmi-Mir-96-P3-v1  Cpi-Mir-96-P3-v1  Cpo-Mir-96-P3-v1  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dpu-Mir-96-P3  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Eca-Mir-96-P3-v1  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Gga-Mir-96-P3-v1  Gja-Mir-96-P3-v1  Gmo-Mir-96-P3a-v1  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Mal-Mir-96-P3a-v1  Mdo-Mir-96-P3-v1  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mmr-Mir-96-P3-v1  Mmu-Mir-96-P3-v1  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Neu-Mir-96-P3-v1  Oan-Mir-96-P3-v1  Ocu-Mir-96-P3-v1  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pbv-Mir-96-P3-v1  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rno-Mir-96-P3-v1  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Tur-Mir-96-P3  War-Mir-96-P3  Xtr-Mir-96-P3-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr4: 15074581-15074642 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3a-v1)		 Mir-96-P3a-v1 chr4: 15074581-15074642 [+] UCSC Ensembl
Mir-96-P3a-v2 chr4: 15074582-15074641 [+] UCSC Ensembl
Mir-96-P1a chr4: 15074738-15074801 [+] UCSC Ensembl
Mir-96-P2a chr4: 15075668-15075732 [+] UCSC Ensembl
Variant

Dre-Mir-96-P3a-v1
Seed AUGGCAC
Precursor
(pre-Mir +30nt flank)		 
AGGGUGAAGCUGACAGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAGCACACUAUCAGUGAAUUACCAAAGGGCCAUAAACAGAGCAGAGAAAGAACCACGUGUUUGAUU
Get precursor sequence
Structure
        10           20        30          40        50        60
AGGGUGAAGCUGACAGA---  C         G      AC--|    GA       GUGAAAG 
                    CU CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                    GA GACGAGACA AUACCG    ACCAU  UAAGUGA       A
UUAGUUUGUGCACCAAGAAA  -         A      GGAA^    --       CUAUCAC 
120       110        100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-96-P3a-v1_5p
mirBase accessionMIMAT0001273
Sequence 
0- UAUGGCACUGGUAGAAUUCACU -22
Get sequence
Proposed targets TargetScanFish: dre-miR-183
Star sequence

Dre-Mir-96-P3a-v1_3p*
mirBase accessionMIMAT0031921
Sequence 
40- UGAAUUACCAAAGGGCCAUAAA -62
Get sequence
Variant

Dre-Mir-96-P3a-v2
Seed UGGCACU
Precursor
(pre-Mir +30nt flank)		 
GGGUGAAGCUGACAGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAGCACACUAUCAGUGAAUUACCAAAGGGCCAUAAACAGAGCAGAGAAAGAACCACGUGUUUGAU
Get precursor sequence
Structure
        10          20        30          40        50         
GGGUGAAGCUGACAGAC-  -         G      AC--|    GA        UGAAAG 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
UAGUUUGUGCACCAAGAA  A         A      GGAA^    --        UAUCAC 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-96-P3a-v2_5p
mirBase accessionMIMAT0001273
Sequence 
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Proposed targets TargetScanFish: dre-miR-183
Star sequence

Dre-Mir-96-P3a-v2_3p*
mirBase accessionMIMAT0031921
Sequence 
38- GUGAAUUACCAAAGGGCCAUAA -60
Get sequence