MirGeneDB ID | Xla-Mir-96-P1c |
Family name |
MIR-96 (all species) |
Seed |
UUGGCAC |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-96-P1d
Xla-Mir-96-P2c
Xla-Mir-96-P2d
Xla-Mir-96-P3c-v1
Xla-Mir-96-P3c-v2
Xla-Mir-96-P3d-v1
Xla-Mir-96-P3d-v2
|
Orthologues |
Ami-Mir-96-P1
Bfl-Mir-96-P1
Bla-Mir-96-P1
Bta-Mir-96-P1
Cfa-Mir-96-P1
Cin-Mir-96-P1
Cli-Mir-96-P1
Cmi-Mir-96-P1
Cpi-Mir-96-P1
Cpo-Mir-96-P1
Cte-Mir-96-P1
Dno-Mir-96-P1
Efe-Mir-96-P1
Ete-Mir-96-P1
Gga-Mir-96-P1
Gja-Mir-96-P1
Hsa-Mir-96-P1
Isc-Mir-96-P1
Lan-Mir-96-P1
Lch-Mir-96-P1
Loc-Mir-96-P1
Mdo-Mir-96-P1
Mml-Mir-96-P1
Mmu-Mir-96-P1
Mun-Mir-96-P1
Oan-Mir-96-P1
Ocu-Mir-96-P1
Pbv-Mir-96-P1
Pfl-Mir-96-P1
Pmi-Mir-96-P1
Rno-Mir-96-P1
Sha-Mir-96-P1
Sko-Mir-96-P1
Spt-Mir-96-P1
Spu-Mir-96-P1
Sto-Mir-96-P1
Tgu-Mir-96-P1
Xbo-Mir-96-P1
Xtr-Mir-96-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030728.1: 77406980-77407043 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCAUCUGGAGAGAACUCUGUCUGGCCUGCUUUGGCACUAGCACAUUUUUGCUUUUGUACAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGACAACACAGAAAAUUCUGCAGCUAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGCAUCUGGAGAGAACU- C-| G CU G UU UUUGUACA
CUGU UG CCUG UUGGCACUA CACAU UUGCU \
GACA AC GGAU AACCGUGAU GUGUA AACGA U
CAGAUCGACGUCUUAAAA CA^ A AU - UU GUUUCAUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Xla-Mir-96-P1c_5p |
mirBase accession | None |
Sequence |
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
|
Star sequence |
Xla-Mir-96-P1c_3p* |
mirBase accession | None |
Sequence |
42- CAAUUAUGUGUAGUGCCAAUAU -64
Get sequence
|