MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-96-P1c

Family name MIR-96 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-96-P1d  Xla-Mir-96-P2c  Xla-Mir-96-P2d  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3d-v1 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 77406980-77407043 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1c)		 Mir-96-P3c-v1 NC_030728.1: 77405965-77406026 [+] UCSC Ensembl
Mir-96-P3c-v2 NC_030728.1: 77405966-77406025 [+] UCSC Ensembl
Mir-96-P1c NC_030728.1: 77406980-77407043 [+] UCSC Ensembl
Mir-96-P2c NC_030728.1: 77410428-77410492 [+] UCSC Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
GGCAUCUGGAGAGAACUCUGUCUGGCCUGCUUUGGCACUAGCACAUUUUUGCUUUUGUACAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGACAACACAGAAAAUUCUGCAGCUAGAC
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Structure
        10         20         30        40        50        60  
GGCAUCUGGAGAGAACU-    C-| G    CU         G     UU     UUUGUACA 
                  CUGU  UG CCUG  UUGGCACUA CACAU  UUGCU        \
                  GACA  AC GGAU  AACCGUGAU GUGUA  AACGA        U
CAGAUCGACGUCUUAAAA    CA^ A    AU         -     UU     GUUUCAUA 
  120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-96-P1c_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Xla-Mir-96-P1c_3p*
mirBase accessionNone
Sequence 
42- CAAUUAUGUGUAGUGCCAAUAU -64
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