Mir-96-P1j

MirGeneDB ID

Sme-Mir-96-P1j

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-96a

Paralogues

Sme-Mir-96-P1k

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000022_dd_Smes_g4_22: 4678463-4678530 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGCUUGCACUUCAUUUGAGUAUAUAUCGUUUGGCACUUAAGGAAUUGUCACUAGUGUUCUUUUUAAAGUUCGGUGACAAUACUAAAGAGUCAAGCGUUUCAACUCGAUUCGCUUCAUAUAUUAAUG

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Structure

        10           20        30        40        50        60    
UUGGCUUGCACUUCAUU---|    AUAUAU        A   A  GA        UAGUGUUCUU 
                    UGAGU      CGUUUGGC CUU AG  AUUGUCAC          \
                    GCUCA      GCGAACUG GAA UC  UAACAGUG          U
GUAAUUAUAUACUUCGCUUA^    ACUUU-        A   A  A-        GCUUGAAAUU 
      120       110       100         90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-96-P1j_5p

mirBase accession

MIMAT0011262

Sequence

0- UUUGGCACUUAAGGAAUUGUCAC -23

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Star sequence

Sme-Mir-96-P1j_3p*

mirBase accession

MIMAT0012159

Sequence

46- GACAAUACUAAAGAGUCAAGCG -68

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