MirGeneDB 3.0

MirGeneDB ID

Sme-Mir-96-P1j

Family name MIR-96 (all species)
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-96a
Paralogues Sme-Mir-96-P1k 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000022_dd_Smes_g4_22: 4678463-4678530 [+] UCSC Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)
UUGGCUUGCACUUCAUUUGAGUAUAUAUCGUUUGGCACUUAAGGAAUUGUCACUAGUGUUCUUUUUAAAGUUCGGUGACAAUACUAAAGAGUCAAGCGUUUCAACUCGAUUCGCUUCAUAUAUUAAUG
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Structure
        10           20        30        40        50        60    
UUGGCUUGCACUUCAUU---|    AUAUAU        A   A  GA        UAGUGUUCUU 
                    UGAGU      CGUUUGGC CUU AG  AUUGUCAC          \
                    GCUCA      GCGAACUG GAA UC  UAACAGUG          U
GUAAUUAUAUACUUCGCUUA^    ACUUU-        A   A  A-        GCUUGAAAUU 
      120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-96-P1j_5p

mirBase accessionMIMAT0011262
Sequence
0- UUUGGCACUUAAGGAAUUGUCAC -23
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Star sequence

Sme-Mir-96-P1j_3p*

mirBase accessionMIMAT0012159
Sequence
46- GACAAUACUAAAGAGUCAAGCG -68
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