MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-96-P1u

Family name MIR-96 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P2r  Lpo-Mir-96-P2s-v1  Lpo-Mir-96-P2t-v1  Lpo-Mir-96-P2u  Lpo-Mir-96-P2v-v1  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665647.1: 244610-244669 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1u)		 Mir-96-P1u NW_013665647.1: 244610-244669 [-] Ensembl
Mir-96-P2u NW_013665647.1: 245719-245777 [-] Ensembl
Mir-96-P3u NW_013665647.1: 250244-250303 [-] Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
AGGACUACGACCCAUUGCACUCUUCCAUUCUUUGGCACUAGCACAUUUUUGUGUCAUAUUUCUACACAAAAAUUGUAUUAGUGUCAAGUAAUGUGGGGAGGCGAACGACGUAACAAUUCA
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Structure
        10         20         30        40         50         
AGGACUACGACCCAUUGCA-      -    C           C  -|       GUCAUA 
                    CUCUUC CAUU UUUGGCACUAG AC AUUUUUGU      \
                    GAGGGG GUAA GAACUGUGAUU UG UAAAAACA      U
ACUUAACAAUGCAGCAAGCG      U    U           A  U^       CAUCUU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-96-P1u_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGU -22
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Star sequence

Lpo-Mir-96-P1u_3p* (predicted)
mirBase accessionNone
Sequence 
37- AAAAAUUGUAUUAGUGUCAAGUA -60
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