Mir-96-P1t

MirGeneDB ID

Lpo-Mir-96-P1t

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1s Lpo-Mir-96-P1u Lpo-Mir-96-P2r Lpo-Mir-96-P2s-v1 Lpo-Mir-96-P2t-v1 Lpo-Mir-96-P2u Lpo-Mir-96-P2v-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v

Orthologues

Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Eba-Mir-96-P1 Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Neu-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 War-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665634.1: 1448182-1448242 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1t)

Mir-96-P3t NW_013665634.1: 1441897-1441956 [+] Ensembl
Mir-96-P2t-v1 NW_013665634.1: 1447496-1447554 [+] Ensembl
Mir-96-P2t-v2 NW_013665634.1: 1447497-1447553 [+] Ensembl
Mir-96-P1t NW_013665634.1: 1448182-1448242 [+] Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

GAGACAUUGUCCCCUUUCACUCUUCCGUUCUUUGGCACUAGCACAUUUUUGUAUUUUAUUUAUACAACAAAAAUAGUGUUAGUUUCAAGCAAUAUGAGGAGAUGGACGACUGACAAAAACA

Get precursor sequence

Structure

        10         20         30        40         50         
GAGACAUUGUCCCCUUUCA-      C-   C     C        -|       AUUUUA 
                    CUCUUC  GUU UUUGG ACUAGCAC AUUUUUGU      U
                    GAGGAG  UAA GAACU UGAUUGUG UAAAAACA      U
ACAAAAACAGUCAGCAGGUA      UA   C     U        A^       ACAUAU 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-96-P1t_5p

mirBase accession

None

Sequence

0- UUUGGCACUAGCACAUUUUUGU -22

Get sequence

Star sequence

Lpo-Mir-96-P1t_3p* (predicted)

mirBase accession

None

Sequence

38- AAAAAUAGUGUUAGUUUCAAGCA -61

Get sequence