Mir-96-P2t-v2

MirGeneDB ID

Lpo-Mir-96-P2t

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Lpo-Mir-96-P2r Lpo-Mir-96-P2s-v1 Lpo-Mir-96-P2t-v1 Lpo-Mir-96-P2u Lpo-Mir-96-P2v-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665634.1: 1447497-1447553 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2t-v2)

Mir-96-P3t NW_013665634.1: 1441897-1441956 [+] Ensembl
Mir-96-P2t-v1 NW_013665634.1: 1447496-1447554 [+] Ensembl
Mir-96-P2t-v2 NW_013665634.1: 1447497-1447553 [+] Ensembl
Mir-96-P1t NW_013665634.1: 1448182-1448242 [+] Ensembl

Variant

Lpo-Mir-96-P2t-v2

Seed

UGGCACU

Precursor
(pre-Mir +30nt flank)

AAAAUGAGACCGAAAGUGACCCCGUUGUCCUUGGCACUGAAGAAUUCACAGAUAUAUUUUAAGGUCGUGGGUUCUCGGGUGUCAAAGAUAAAGGAUAUGAUGAUACUUCAAUGCUAA

Get precursor sequence

Structure

        10        20          30        40        50        
AAAAUGAGACCGAAAGUGACC--| G     C        GA         A  UAUAU 
                       CC UUGUC UUGGCACU  AGAAUUCAC GA     U
                       GG AAUAG AACUGUGG  UCUUGGGUG CU     U
AAUCGUAACUUCAUAGUAGUAUA^ A     A        GC         -  GGAAU 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-96-P2t-v2_5p

mirBase accession

None

Sequence

0- UUGGCACUGAAGAAUUCACAGA -22

Get sequence

Star sequence

Lpo-Mir-96-P2t-v2_3p* (predicted)

mirBase accession

None

Sequence

35- CGUGGGUUCUCGGGUGUCAAAG -57

Get sequence

Variant

Lpo-Mir-96-P2t-v1

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

AAAAAUGAGACCGAAAGUGACCCCGUUGUCCUUGGCACUGAAGAAUUCACAGAUAUAUUUUAAGGUCGUGGGUUCUCGGGUGUCAAAGAUAAAGGAUAUGAUGAUACUUCAAUGCUAAA

Get precursor sequence

Structure

        10        20          30        40        50         
AAAAAUGAGACCGAAAGUGACC--| G     C        GA         AGAUAUAU 
                        CC UUGUC UUGGCACU  AGAAUUCAC        \
                        GG AAUAG AACUGUGG  UCUUGGGUG        U
AAAUCGUAACUUCAUAGUAGUAUA^ A     A        GC         CUGGAAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-96-P2t-v1_5p

mirBase accession

None

Sequence

0- CUUGGCACUGAAGAAUUCACAG -22

Get sequence

Star sequence

Lpo-Mir-96-P2t-v1_3p* (predicted)

mirBase accession

None

Sequence

37- GUGGGUUCUCGGGUGUCAAAGA -59

Get sequence