MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-96-P1a

Family name MIR-96 (all species)
Seed UUGGCAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-96
Paralogues Gmo-Mir-96-P2a  Gmo-Mir-96-P3a-v1  Gmo-Mir-96-P3a-v2 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Dre-Mir-96-P1a  Efe-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Loc-Mir-96-P1  Mal-Mir-96-P1a  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1a)
Mir-96-P3a-v1 GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl
Mir-96-P3a-v2 GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Mir-96-P1a GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Mir-96-P2a GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGACAACUCCCUCUUCUUCUUUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUGGUGCCAAUAUGGGACGAGACAGUCUUGCAACUGUGGCGUA
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Structure
        10          20        30        40        50        60  
CUCGACAACUCCCUCUUCU--|   UG     U         G     UU     UCUGUAUA 
                     UCUU  CCCAU UUGGCACUA CACAU  UUGCU        \
                     AGAG  GGGUA AACCGUGGU GUGUA  AACGA        U
AUGCGGUGUCAACGUUCUGAC^   CA     U         -     UU     GUUUCAUA 
  120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-96-P1a_5p

mirBase accessionMIMAT0044263
Sequence
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Gmo-Mir-96-P1a_3p*

mirBase accessionMIMAT0044264
Sequence
42- CAAUUAUGUGUGGUGCCAAUAU -64
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