MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-96-P3

Family name MIR-96 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-183
Paralogues Rno-Mir-96-P1  Rno-Mir-96-P2  Rno-Mir-96-P3-v1 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Ami-Mir-96-P3-v1  Asu-Mir-96-P3  Ava-Mir-96-P3y  Ava-Mir-96-P3z  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cli-Mir-96-P3-v1  Cmi-Mir-96-P3-v1  Cpi-Mir-96-P3-v1  Cpo-Mir-96-P3-v1  Csc-Mir-96-P3w  Csc-Mir-96-P3x  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dpu-Mir-96-P3  Dre-Mir-96-P3a-v1  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f  Eca-Mir-96-P3-v1  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Gga-Mir-96-P3-v1  Gja-Mir-96-P3-v1  Gmo-Mir-96-P3a-v1  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3b-v1  Mdo-Mir-96-P3-v1  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mmr-Mir-96-P3-v1  Mmu-Mir-96-P3-v1  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Neu-Mir-96-P3-v1  Oan-Mir-96-P3-v1  Ocu-Mir-96-P3-v1  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pau-Mir-96-P3g  Pau-Mir-96-P3h  Pbv-Mir-96-P3-v1  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Tni-Mir-96-P3b  Tur-Mir-96-P3  War-Mir-96-P3  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3d-v1  Xtr-Mir-96-P3-v1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr4: 57463592-57463651 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3-v2)		 Mir-96-P2 chr4: 57459736-57459800 [-] UCSC Ensembl
Mir-96-P1 chr4: 57463385-57463448 [-] UCSC Ensembl
Mir-96-P3-v1 chr4: 57463591-57463652 [-] UCSC Ensembl
Mir-96-P3-v2 chr4: 57463592-57463651 [-] UCSC Ensembl
Variant

Rno-Mir-96-P3-v2
Seed UGGCACU
Precursor
(pre-Mir +30nt flank)		 
AGGCCAGAGAGUGUGACUCCUGUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCGGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCGCGAGUGCUUC
Get precursor sequence
Structure
        10          20        30          40        50         
AGGCCAGAGAGUGUGAC-  -   UC    G      AC--|    GA        UGAACA 
                  UC CUG  CUGU UAUGGC    UGGUA  AUUCACUG      G
                  AG GAC  GACA AUACCG    GCCAU  UAAGUGAC      U
CUUCGUGAGCGCCUAGAC  A   GA    A      GGAA^    --        UGGCUC 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-96-P3-v2_5p
mirBase accessionMIMAT0000860
Sequence 
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Proposed targets microrna.org: MIMAT0000860
TargetScanVert: rno-miR-183-5p
miRDB: MIMAT0000860
Star sequence

Rno-Mir-96-P3-v2_3p*
mirBase accessionMIMAT0017141
Sequence 
38- GUGAAUUACCGAAGGGCCAUAA -60
Get sequence
Proposed targets TargetScanVert: rno-miR-183-3p
miRDB: MIMAT0017141
Variant

Rno-Mir-96-P3-v1
Seed AUGGCAC
Precursor
(pre-Mir +30nt flank)		 
CAGGCCAGAGAGUGUGACUCCUGUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCGGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCGCGAGUGCUUCG
Get precursor sequence
Structure
        10           20        30          40        50        60
CAGGCCAGAGAGUGUGA---  C   UC    G      AC--|    GA       GUGAACA 
                    CU CUG  CUGU UAUGGC    UGGUA  AUUCACU       G
                    GA GAC  GACA AUACCG    GCCAU  UAAGUGA       U
GCUUCGUGAGCGCCUAGACA  -   GA    A      GGAA^    --       CUGGCUC 
120       110        100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-96-P3-v1_5p
mirBase accessionMIMAT0000860
Sequence 
0- UAUGGCACUGGUAGAAUUCACU -22
Get sequence
Proposed targets microrna.org: MIMAT0000860
TargetScanVert: rno-miR-183-5p
miRDB: MIMAT0000860
Star sequence

Rno-Mir-96-P3-v1_3p*
mirBase accessionMIMAT0017141
Sequence 
40- UGAAUUACCGAAGGGCCAUAAA -62
Get sequence
Proposed targets TargetScanVert: rno-miR-183-3p
miRDB: MIMAT0017141