MirGeneDB

MirGeneDB ID

Rno-Mir-96-P3-v2

Family name MIR-96 (all species)
Seed UGGCACU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-183
Paralogues Rno-Mir-96-P1  Rno-Mir-96-P2  Rno-Mir-96-P3-v1 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(rn6)
chr4: 57463592-57463651 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-96-P3-v2)
Mir-96-P2 chr4: 57459736-57459800 [-] UCSC Ensembl
Mir-96-P1 chr4: 57463385-57463448 [-] UCSC Ensembl
Mir-96-P3-v1 chr4: 57463591-57463652 [-] UCSC Ensembl
Mir-96-P3-v2 chr4: 57463592-57463651 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCCAGAGAGUGUGACUCCUGUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCGGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCGCGAGUGCUUC
Get precursor sequence
Structure
        10          20        30          40        50         
AGGCCAGAGAGUGUGAC-  -   UC    G      AC--|    GA        UGAACA 
                  UC CUG  CUGU UAUGGC    UGGUA  AUUCACUG      G
                  AG GAC  GACA AUACCG    GCCAU  UAAGUGAC      U
CUUCGUGAGCGCCUAGAC  A   GA    A      GGAA^    --        UGGCUC 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-96-P3-v2_5p

MirBase accessionMIMAT0000860
Sequence
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Validated targets microrna.org: MIMAT0000860
TargetScanVert: rno-miR-183-5p
miRDB: MIMAT0000860
Star sequence

Rno-Mir-96-P3-v2_3p*

MirBase accessionMIMAT0017141
Sequence
38- GUGAAUUACCGAAGGGCCAUAA -60
Get sequence
Validated targets TargetScanVert: rno-miR-183-3p
miRDB: MIMAT0017141