MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-96-P2

Family name MIR-96 (all species)
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-263b
Paralogues Dpu-Mir-96-P2-v1  Dpu-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bfl-Mir-96-P2f  Bfl-Mir-96-P2g  Bfl-Mir-96-P2h  Bfl-Mir-96-P2i  Bfl-Mir-96-P2j  Bfl-Mir-96-P2k  Bge-Mir-96-P2  Bla-Mir-96-P2f  Bla-Mir-96-P2g  Bla-Mir-96-P2h  Bla-Mir-96-P2i  Bla-Mir-96-P2j  Bla-Mir-96-P2k  Bta-Mir-96-P2  Cbr-Mir-96-P2p  Cbr-Mir-96-P2q  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Csc-Mir-96-P2w  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dme-Mir-96-P2  Dno-Mir-96-P2  Dre-Mir-96-P2a  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Ebu-Mir-96-P2e  Eca-Mir-96-P2  Efe-Mir-96-P2n  Efe-Mir-96-P2o  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gmo-Mir-96-P2a  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Loc-Mir-96-P2  Lpo-Mir-96-P2r  Lpo-Mir-96-P2s-v1  Lpo-Mir-96-P2t-v1  Lpo-Mir-96-P2u  Lpo-Mir-96-P2v-v1  Mal-Mir-96-P2a  Mal-Mir-96-P2b  Mdo-Mir-96-P2  Mgi-Mir-96-P2l  Mgi-Mir-96-P2m  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mom-Mir-96-P2x  Mom-Mir-96-P2y  Mom-Mir-96-P2z  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pma-Mir-96-P2o1  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tni-Mir-96-P2a  Tni-Mir-96-P2b  Tur-Mir-96-P2  War-Mir-96-P2  Xla-Mir-96-P2c  Xla-Mir-96-P2d  Xtr-Mir-96-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_87: 475818-475878 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2-v2)		 Mir-96-P3 DAPPUscaffold_87: 475620-475711 [+] Ensembl
Mir-96-P2-v1 DAPPUscaffold_87: 475817-475879 [+] Ensembl
Mir-96-P2-v2 DAPPUscaffold_87: 475818-475878 [+] Ensembl
Novel-3 DAPPUscaffold_87: 490784-490839 [+] Ensembl
Variant

Dpu-Mir-96-P2-v2
Seed UGGCACU
Precursor
(pre-Mir +30nt flank)		 
UAUGUAGGAAAUUAAAUAUUCCGGUGAUCCUUGGCACUGGAAGAAUUCACAGAGUGCAUUACGACAGGUCGUGGGUUCCCUGGUGCCAGAGAUUGCUCCCGGAAAUCAAUAUCAUCACAAU
Get precursor sequence
Structure
        10        20           30        40        50        60
UAUGUAGGAAAUUAAAUAU    ---|UG   C       UG AA        AGAGUGCAU 
                   UCCG   G  AUC UUGGCAC  G  GAAUUCAC         U
                   AGGC   C  UAG GACCGUG  C  CUUGGGUG         A
UAACACUACUAUAACUAA-    CCU^GU   A       GU C-        CUGGACAGC 
 .       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Dpu-Mir-96-P2-v2_5p
mirBase accessionMIMAT0012650
Sequence 
0- UUGGCACUGGAAGAAUUCACAGA -23
Get sequence
Star sequence

Dpu-Mir-96-P2-v2_3p*
mirBase accessionNone
Sequence 
40- GUGGGUUCCCUGGUGCCAGAG -61
Get sequence
Variant

Dpu-Mir-96-P2-v1
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
AUAUGUAGGAAAUUAAAUAUUCCGGUGAUCCUUGGCACUGGAAGAAUUCACAGAGUGCAUUACGACAGGUCGUGGGUUCCCUGGUGCCAGAGAUUGCUCCCGGAAAUCAAUAUCAUCACAAUU
Get precursor sequence
Structure
        10        20           30        40        50        60 
AUAUGUAGGAAAUUAAAUA     ---|UG   C       UG AA        AGAGUGCAU 
                   UUCCG   G  AUC UUGGCAC  G  GAAUUCAC         U
                   AAGGC   C  UAG GACCGUG  C  CUUGGGUG         A
UUAACACUACUAUAACUA-     CCU^GU   A       GU C-        CUGGACAGC 
 120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Dpu-Mir-96-P2-v1_5p
mirBase accessionMIMAT0012650
Sequence 
0- CUUGGCACUGGAAGAAUUCACAGA -24
Get sequence
Star sequence

Dpu-Mir-96-P2-v1_3p*
mirBase accessionNone
Sequence 
41- GUGGGUUCCCUGGUGCCAGAGA -63
Get sequence