MirGeneDB 2.1

MirGeneDB ID

Dpu-Novel-3

Family name DPU-NOVEL-3 (all species)
Seed UGCACUG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_13: 1740035-1740097 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUUUAAAAAGAUCGAACGACGACACUGACUUCGAGCCGACCAGUUGCUUUGUGGCAUCAAGACUUCAUUGCACUGUACGGUUCGAGGCGAAUGUCUCGUUGAAUAAACUACGAAUUUAAU
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Structure
        10           20         30        40        50        60 
AAGAUUUAAAAAGAUCG---|    C    C-  A          AC    U  UU  UGGCAU 
                    AACGA GACA  UG CUUCGAGCCG  CAGU GC  UG      C
                    UUGCU CUGU  GC GGAGCUUGGC  GUCA CG  AC      A
UAAUUUAAGCAUCAAAUAAG^    -    AA  -          AU    -  UU  UUCAGA 
 120       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Dpu-Novel-3_5p*

mirBase accessionNone
Sequence
0- ACUUCGAGCCGACCAGUUGCUUUG -24
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Mature sequence

Dpu-Novel-3_3p

mirBase accessionNone
Sequence
40- UUGCACUGUACGGUUCGAGGCGA -63
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