MirGeneDB ID | Xtr-Mir-96-P3 |
Family name |
MIR-96 (all species) |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-183
|
Paralogues |
Xtr-Mir-96-P1
Xtr-Mir-96-P2
Xtr-Mir-96-P3-v1
|
Orthologues |
Aae-Mir-96-P3
Aga-Mir-96-P3
Agr-Mir-96-P3
Ami-Mir-96-P3-v1
Asu-Mir-96-P3
Ava-Mir-96-P3y
Ava-Mir-96-P3z
Bfl-Mir-96-P3
Bge-Mir-96-P3
Bko-Mir-96-P3
Bla-Mir-96-P3
Bpl-Mir-96-P3
Bta-Mir-96-P3-v1
Cbr-Mir-96-P3
Cel-Mir-96-P3
Cfa-Mir-96-P3-v1
Cin-Mir-96-P3
Cja-Mir-96-P3-v1
Cli-Mir-96-P3-v1
Cmi-Mir-96-P3-v1
Cpi-Mir-96-P3-v1
Cpo-Mir-96-P3-v1
Csc-Mir-96-P3w
Csc-Mir-96-P3x
Cte-Mir-96-P3
Dan-Mir-96-P3
Dgr-Mir-96-P3
Dlo-Mir-96-P3
Dma-Mir-96-P3
Dme-Mir-96-P3
Dmo-Mir-96-P3
Dno-Mir-96-P3-v1
Dpu-Mir-96-P3
Dre-Mir-96-P3a-v1
Dsi-Mir-96-P3
Dya-Mir-96-P3
Eba-Mir-96-P3
Ebu-Mir-96-P3e
Ebu-Mir-96-P3f
Eca-Mir-96-P3-v1
Egr-Mir-96-P3
Ete-Mir-96-P3-v1
Gga-Mir-96-P3-v1
Gja-Mir-96-P3-v1
Gmo-Mir-96-P3a-v1
Gpa-Mir-96-P3
Gsp-Mir-96-P3
Hme-Mir-96-P3
Hru-Mir-96-P3
Hsa-Mir-96-P3-v1
Isc-Mir-96-P3
Lan-Mir-96-P3
Lch-Mir-96-P3
Lgi-Mir-96-P3
Lhy-Mir-96-P3
Llo-Mir-96-P3
Loc-Mir-96-P3-v1
Lpo-Mir-96-P3r
Lpo-Mir-96-P3s
Lpo-Mir-96-P3t
Lpo-Mir-96-P3u
Lpo-Mir-96-P3v
Mal-Mir-96-P3a-v1
Mal-Mir-96-P3b-v1
Mdo-Mir-96-P3-v1
Mgi-Mir-96-P3
Mml-Mir-96-P3-v1
Mmr-Mir-96-P3-v1
Mmu-Mir-96-P3-v1
Mom-Mir-96-P3
Mun-Mir-96-P3-v1
Neu-Mir-96-P3-v1
Oan-Mir-96-P3-v1
Ocu-Mir-96-P3-v1
Ofu-Mir-96-P3
Pab-Mir-96-P3-v1
Pau-Mir-96-P3g
Pau-Mir-96-P3h
Pbv-Mir-96-P3-v1
Pca-Mir-96-P3
Pcr-Mir-96-P3
Pdu-Mir-96-P3
Pfl-Mir-96-P3
Pma-Mir-96-P3o1
Pma-Mir-96-P3o2
Pmi-Mir-96-P3
Pve-Mir-96-P3
Rno-Mir-96-P3-v1
Rph-Mir-96-P3
Sha-Mir-96-P3-v1
Sko-Mir-96-P3
Snu-Mir-96-P3
Spt-Mir-96-P3
Spu-Mir-96-P3
Sro-Mir-96-P3
Sto-Mir-96-P3-v1
Tca-Mir-96-P3
Tgu-Mir-96-P3
Tni-Mir-96-P3a
Tni-Mir-96-P3b
Tur-Mir-96-P3
War-Mir-96-P3
Xla-Mir-96-P3c-v1
Xla-Mir-96-P3d-v1
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (xenTro9_add) |
chr3: 77399665-77399724 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-96-P3-v2) |
Mir-96-P3-v1
chr3: 77399664-77399725 [+]
UCSC
Ensembl
Mir-96-P3-v2
chr3: 77399665-77399724 [+]
UCSC
Ensembl
Mir-96-P1
chr3: 77400820-77400883 [+]
UCSC
Ensembl
Mir-96-P2
chr3: 77404465-77404529 [+]
UCSC
Ensembl
|
Variant | Xtr-Mir-96-P3-v2 |
Seed |
UGGCACU |
Precursor (pre-Mir +30nt flank) |
CGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGAACACG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCUGGGUGAGCAUCCC- - G AC--| GA UGAAAA
UC CUGUUCUGU UAUGGC UGGUA AUUCACUG C
AG GACGAGACA AUACCG ACCAU UAAGUGAC A
GCACAAGAACACCAAGAA A A GGAU^ -- UAAAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-96-P3-v2_5p |
mirBase accession | MIMAT0003612 |
Sequence |
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-183
|
Star sequence |
Xtr-Mir-96-P3-v2_3p* |
mirBase accession | None |
Sequence |
38- GUGAAUUACCAUAGGGCCAUAA -60
Get sequence
|
Variant | Xtr-Mir-96-P3-v1 |
Seed |
AUGGCAC |
Precursor (pre-Mir +30nt flank) |
UCGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGAACACGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCGCUGGGUGAGCAUCCC- - G AC--| GA GUGAAAA
UC CUGUUCUGU UAUGGC UGGUA AUUCACU C
AG GACGAGACA AUACCG ACCAU UAAGUGA A
UGCACAAGAACACCAAGAA A A GGAU^ -- CUAAAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-96-P3-v1_5p |
mirBase accession | MIMAT0003612 |
Sequence |
0- UAUGGCACUGGUAGAAUUCACU -22
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-183
|
Star sequence |
Xtr-Mir-96-P3-v1_3p* |
mirBase accession | None |
Sequence |
40- UGAAUUACCAUAGGGCCAUAAA -62
Get sequence
|