MirGeneDB 3.0
MirGeneDB ID

Gsp-Mir-12

Family name MIR-12 (all species)
Species Montseny horsehair worm (Gordionus sp.)
MiRBase ID
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_954871325.1_tfGorGonz1-WG_genomic)		 OX940787.1: 22142794-22142856 [-]
Seed GAGUAUU
Precursor
(pre-Mir +30nt flank)		 
GAAAUAAAUGAAAAUUUUUUCUUGGCAGUAUGAGUAUUACAUCAGGUACUGAGUGUAGUUAUAAUUGUCUCGGUGCUUGGUGAAUUGCUCCUAUUGAUGAGAAUCACGCAGAGAUAAAUUUUU
Get precursor sequence
Structure
        10          20        30        40        50        60 
GAAAUAAAUGAAAAUUUU--|    GG     U     UUA             GUGUAGUU 
                    UUCUU  CAGUA GAGUA   CAUCAGGUACUGA        \
                    AAGAG  GUUAU CUCGU   GUGGUUCGUGGCU        A
UUUUUAAAUAGAGACGCACU^    UA     C     UAA             CUGUUAAU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
- +
Wh Wh
Mature sequence

Gsp-Mir-12_5p
mirBase accessionNone
Sequence 
0- UGAGUAUUACAUCAGGUACUGA -22
Get sequence
Star sequence

Gsp-Mir-12_3p* (predicted)
mirBase accessionNone
Sequence 
41- GGUGCUUGGUGAAUUGCUCCUA -63
Get sequence