MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-216-P2h

Family name MIR-216 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-216-P2g  Lpo-Mir-216-P2i 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Hme-Mir-216-P2  Isc-Mir-216-P2  Pca-Mir-216-P2  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Nephrozoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013672844.1: 19553-19608 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2h)		 Mir-12-P6 NW_013672844.1: 18331-18392 [-] Ensembl
Mir-216-P2h NW_013672844.1: 19553-19608 [-] Ensembl
Seed AAUCUCA
Precursor
(pre-Mir +30nt flank)		 
UCUUCUAAACUAUCUGUAGUGGUGGCGGUCUAAUCUCAUGAGGUAACUCUGGAUAGGCCUAUUUCGGGGUACCUAGUGAGAUGCGAUAGGCACCAUGUUUCUCACCAAUCUAACCA
Get precursor sequence
Structure
        10          20        30        40        50        
UCUUCUAAACUAUCUGUA--|     GCG   UA       G     A       UAGG 
                    GUGGUG   GUC  AUCUCAU AGGUA CUCUGGA    \
                    UACCAC   UAG  UAGAGUG UCCAU GGGGCUU    C
ACCAAUCUAACCACUCUUUG^     GGA   CG       A     -       UAUC 
    110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-216-P2h_5p
mirBase accessionNone
Sequence 
0- UAAUCUCAUGAGGUAACUCUGGA -23
Get sequence
Star sequence

Lpo-Mir-216-P2h_3p*
mirBase accessionNone
Sequence 
34- CGGGGUACCUAGUGAGAUGCGA -56
Get sequence