MirGeneDB 3.0

MirGeneDB ID

Snu-Mir-216-P2d

Family name MIR-216 (all species)
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-216-P1  Snu-Mir-216-P2c 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Hru-Mir-216-P2d  Isc-Mir-216-P2  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lgi-Mir-216-P2d  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Ovu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pdu-Mir-216-P2d  Pve-Mir-216-P2d  Rph-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)
CM049308.1: 11130439-11130498 [-]
Clustered miRNAs
(< 50kb from Mir-216-P2d)
Mir-12 CM049308.1: 11128211-11128272 [-]
Mir-216-P2d CM049308.1: 11130439-11130498 [-]
Mir-216-P1 CM049308.1: 11132643-11132702 [-]
Mir-216-P2c CM049308.1: 11133197-11133256 [-]
Seed AAUCUCA
Precursor
(pre-Mir +30nt flank)
UACGAUGCUUUGAUAAUUGUGACGACAGGUUAAUCUCAGCAGGUAAAAGUGAGUGGAAACGUGUAUCUCCAGUUGCCUUCUGGGAUUGCCCCUGACGUUGCUACUAACAGCUUACUAAUU
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Structure
        10         20        30         40        50          
UACGAUGCUUUGAUAAUU- UG   A    U-|        C      AAGU   UGGAAA 
                   G  ACG CAGG  UAAUCUCAG AGGUAA    GAG      \
                   C  UGC GUCC  GUUAGGGUC UCCGUU    CUC      C
UUAAUCAUUCGACAAUCAU GU   A    CC^        U      GAC-   UAUGUG 
.       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Snu-Mir-216-P2d_5p (predicted)

mirBase accessionNone
Sequence
0- UAAUCUCAGCAGGUAAAAGUGAG -23
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Star sequence

Snu-Mir-216-P2d_3p* (predicted)

mirBase accessionNone
Sequence
37- UCCAGUUGCCUUCUGGGAUUGCC -60
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