MirGeneDB 2.1
MirGeneDB ID

Sha-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-216b
Paralogues Sha-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Ami-Mir-216-P2a  Asu-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cgi-Mir-216-P2  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Efe-Mir-216-P2  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Lch-Mir-216-P2a  Lgi-Mir-216-P2  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pbv-Mir-216-P2a  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)		 GL834734.1: 1003794-1003855 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-216-P2a GL834734.1: 1003794-1003855 [+] UCSC Ensembl
Mir-216-P2b GL834734.1: 1019972-1020033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCAACCUGAAUGUGAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUUGCUAUAGUUAUCACACAAUUACCUGUAGAGAUUCUGCAAUCUGACAUCAUACAUCAGAUCUGUGAU
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Structure
        10                 20        30        40        50        60
UCCCAACCUGAAUGUGA---------|       CUGGGAA           C  A    GUGUUGCU 
                          GUUGCAGA       AUCUCUGCAGG AA UGUG        A
                          UAACGUCU       UAGAGAUGUCC UU ACAC        U
UAGUGUCUAGACUACAUACUACAGUC^       -------           A  A    ACUAUUGA 
120       110       100        90               80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 relatve to what is annotated here and this second cut is monouridylated at the 3' end.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-216-P2a_5p
mirBase accessionMIMAT0022776
Sequence 
0- AAAUCUCUGCAGGCAAAUGUGG -22
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Star sequence

Sha-Mir-216-P2a_3p*
mirBase accessionNone
Sequence 
40- ACAAUUACCUGUAGAGAUUCUG -62
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