| MirGeneDB ID | Ebu-Mir-4544 |
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| Family name |
MIR-4544 (all species) |
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| Seed |
ACCCUAU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Pma-Mir-4544
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| Node of Origin (locus) |
Cyclostomata
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| Node of Origin (family) |
Cyclostomata
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Genome context
(Eburgeri_3) |
FYBX02009703.1: 1475704-1475762 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCUUUGUUCGACCACUGUGCUGUGGGUUCUACCCUAUUCUGACCCUUGACUUGUGAAUGGUGAUUGUCCGGGGUCGGCGUAGGCUAUAACCCAGGCGACACGACCCGUCGUACUAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCCUUUGUUCGACCACU-- -| G C C U U UUGUGAA
GU GCU UGGGUU UA CCUAU CUGACCCU GAC \
CA CGG ACCCAA AU GGAUG GGCUGGGG CUG U
UUUAUCAUGCUGCCCAGCA G^ - U C C C UUAGUGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
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| Mature sequence |
Ebu-Mir-4544_5p |
| mirBase accession | None |
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| Sequence |
0- UACCCUAUUCUGACCCUUGACU -22
Get sequence
|
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| Star sequence |
Ebu-Mir-4544_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
37- UCCGGGGUCGGCGUAGGCUAUA -59
Get sequence
|
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