| MirGeneDB ID | Pma-Mir-4542 |
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| Family name |
MIR-4542 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-4542
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| Paralogues |
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| Orthologues |
Ebu-Mir-4542
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| Node of Origin (locus) |
Cyclostomata
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| Node of Origin (family) |
Cyclostomata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046092.1: 9705019-9705078 [-]
UCSC
Ensembl
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| Seed |
CAAGUGC |
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Precursor
(pre-Mir +30nt flank) |
AUAUCCUAAGCCAUUUUUGGGUUGACAUGUCAUGUUCCAUGUUGCACUUCUGUGAAGAUGCUAGUCAGCAAGUGCAUUUUGGAAUGUGACAUGUUGACUCCAGUCAUCAGCUUUAACUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUAUCCUAAGCCAUUUU- - UG UGU -| UGAAGA
UGG GU ACAUGUCAUGUUCCA UGCACUU CUG \
ACC CA UGUACAGUGUAAGGU ACGUGAA GAC U
GUUCAAUUUCGACUACUG U GU UUU C^ UGAUCG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-4542_5p* |
| mirBase accession | MIMAT0019570 |
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| Sequence |
0- CAUGUUCCAUGUUGCACUUCUG -22
Get sequence
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| Mature sequence |
Pma-Mir-4542_3p |
| mirBase accession | MIMAT0019571 |
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| Sequence |
37- GCAAGUGCAUUUUGGAAUGUGAC -60
Get sequence
|
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