| MirGeneDB ID | Ebu-Mir-4543 |
|---|
| Family name |
MIR-4543 (all species) |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Pma-Mir-4543
|
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| Node of Origin (locus) |
Cyclostomata
|
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| Node of Origin (family) |
Cyclostomata
|
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Genome context
(Eburgeri_3) |
FYBX02010165.1: 3341649-3341709 [+]
UCSC
Ensembl
|
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| Seed |
AUAGGUC |
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Precursor
(pre-Mir +30nt flank) |
CCACAUAUAUGCACAGUGGUCUGUUCGGUCUAUAGGUCUGCGUCGUGAAGUGCAGUUACAUUUACAAACCACUUCUCGCACAGACCUAUUGACCACACGGGUCGUCCCCCAGCAGCUCCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCACAUAUAUGCACAGU-|GU UC U C U U CAGUUACA
G CUGU GGUC AUAGGUCUG G CG GAAGUG \
C GGCA CCAG UAUCCAGAC C GC CUUCAC U
ACCCUCGACGACCCCCUG^UG CA U A - U CAAACAUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-4543_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAUAGGUCUGCGUCGUGAAGUGC -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-4543_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CACUUCUCGCACAGACCUAUUG -61
Get sequence
|
|---|
