| MirGeneDB ID | Pma-Mir-4543 |
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| Family name |
MIR-4543 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-4543
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| Paralogues |
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| Orthologues |
Ebu-Mir-4543
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| Node of Origin (locus) |
Cyclostomata
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| Node of Origin (family) |
Cyclostomata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046098.1: 11451420-11451481 [-]
UCSC
Ensembl
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| Seed |
AUAGGUC |
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Precursor
(pre-Mir +30nt flank) |
UACAAAUGUGCCCGCUUGGAUGCACCUGUUUAUAGGUCUGUGUUGUGAUGUGCGAUGUUUACAAUGCUCCACUUCACACACUGCCCUAUUGACAAUGGCAGCCACUCUCGCCUGCCAUGGAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UACAAAUGUGCCCGCUU--| A ACC U UCU U U CGAUGUUU
GG UGC UGUU AUAGG GUGU GUGA GUG \
CC ACG ACAG UAUCC CACA CACU CAC A
GAGGUACCGUCCGCUCUCA^ G GUA U CGU - U CUCGUAAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-4543_5p |
| mirBase accession | MIMAT0019572 |
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| Sequence |
0- UAUAGGUCUGUGUUGUGAUGUGC -23
Get sequence
|
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| Star sequence |
Pma-Mir-4543_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
40- ACUUCACACACUGCCCUAUUGA -62
Get sequence
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