MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-4543

Family name MIR-4543 (all species)
Seed AUAGGUC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-4543
Paralogues
Orthologues Ebu-Mir-4543 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Cyclostomata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046098.1: 11451420-11451481 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAAAUGUGCCCGCUUGGAUGCACCUGUUUAUAGGUCUGUGUUGUGAUGUGCGAUGUUUACAAUGCUCCACUUCACACACUGCCCUAUUGACAAUGGCAGCCACUCUCGCCUGCCAUGGAG
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Structure
        10          20        30        40        50        60 
UACAAAUGUGCCCGCUU--| A   ACC    U     UCU    U    U   CGAUGUUU 
                   GG UGC   UGUU AUAGG   GUGU GUGA GUG        \
                   CC ACG   ACAG UAUCC   CACA CACU CAC        A
GAGGUACCGUCCGCUCUCA^ G   GUA    U     CGU    -    U   CUCGUAAC 
120       110       100        90        80         70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-4543_5p

mirBase accessionMIMAT0019572
Sequence
0- UAUAGGUCUGUGUUGUGAUGUGC -23
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Star sequence

Pma-Mir-4543_3p* (predicted)

mirBase accessionNone
Sequence
40- ACUUCACACACUGCCCUAUUGA -62
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