| MirGeneDB ID | Ebu-Mir-4545-P2 |
|---|
| Family name |
MIR-4545 (all species) |
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| Seed |
ACAGCAU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
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| Paralogues |
Ebu-Mir-4545-P1-v1
Ebu-Mir-4545-P1-v2
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| Orthologues |
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| Node of Origin (locus) |
Cyclostomata
|
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| Node of Origin (family) |
Cyclostomata
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Genome context
(Eburgeri_3) |
FYBX02006480.1: 741413-741473 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGCGUUUGCCCGGGCUUGCCCGUCGCGGCUCCGCACAGAUGGUUGCUUUGCCACGUGAGGUCGACCAGGUACAGCAUCCAGUUGUGCGAAUCUGCGGCGGUCGCUCUAAUGCCCCUCAGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGCGUUUGCCCGGGCUU--|C CUC A U U ACGUGAG
G CCGUCGCGG CGCACAG UGG UGCU UGCC \
C GGCGGCGUC GCGUGUU ACC ACGA AUGG G
ACGACUCCCCGUAAUCUCG^U UAA G U C ACCAGCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-4545-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- CCGCACAGAUGGUUGCUUUGCC -22
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-4545-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UACAGCAUCCAGUUGUGCGAAU -61
Get sequence
|
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