MirGeneDB 3.0

15 microRNA genes with seed CCAGUGU
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Pma-Mir-199-o1 pma-mir-199a MIR-199 CCAGUGU MIMAT0019505 MIMAT0019506 NC_046090.1 4834920 4834980 + P. marinus Vertebrata No 1 1
Pma-Mir-199-o3 None MIR-199 CCAGUGU None None NC_046127.1 1016358 1016419 + P. marinus Vertebrata Unknown 1
Cja-Mir-199-P1 V None MIR-199 CCAGUGU None None CM021932.1 24123359 24123419 + Gnathostomata Vertebrata 3 No 1
Loc-Mir-199-P1 V None MIR-199 CCAGUGU None None LG10 26292830 26292890 - Gnathostomata Vertebrata 2 No 1
Cja-Mir-199-P2 V None MIR-199 CCAGUGU None None CM021915.1 173904910 173904970 - Gnathostomata Vertebrata 3 No
Loc-Mir-199-P2 V None MIR-199 CCAGUGU None None LG21 12007937 12007997 - Gnathostomata Vertebrata 2 No
Xtr-Mir-199-P3 xtr-mir-199b MIR-199 CCAGUGU MIMAT0003692 None chr3 127964118 127964178 - Gnathostomata Vertebrata No 1
Cja-Mir-199-P3 V None MIR-199 CCAGUGU None None CM021936.1 9634758 9634820 - Gnathostomata Vertebrata 3 No 1
Loc-Mir-199-P3 V None MIR-199 CCAGUGU None None LG6 19340903 19340963 + Gnathostomata Vertebrata 2 No 1
Xla-Mir-199-P3a None MIR-199 CCAGUGU None None NC_030728.1 132099453 132099513 - X. laevis Vertebrata No 1
Xla-Mir-199-P3b None MIR-199 CCAGUGU None None NW_016694811.1 452651 452711 - X. laevis Vertebrata No 1
Ebu-Mir-199-P5 None MIR-199 CCAGUGU None None FYBX02009869.1 649889 649949 + E. burgeri Vertebrata No 1 1
Ebu-Mir-199-P6 None MIR-199 CCAGUGU None None FYBX02009521.1 561808 561868 + E. burgeri Vertebrata No 1
Ebu-Mir-338-P3 None MIR-338 CCAGUGU None None FYBX02010050.1 36039 36101 + Cyclostomata Vertebrata No 1
Pma-Mir-338-P3 pma-mir-338b MIR-338 CCAGUGU None MIMAT0019540 NC_046071.1 19740631 19740695 + Cyclostomata Vertebrata No

(red - mature/co-mature, blue - star)

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