MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-199-P2

Family name MIR-199 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-199-P1-v1  Loc-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P2-v1  Ami-Mir-199-P2-v1  Bta-Mir-199-P2-v1  Cfa-Mir-199-P2-v1  Cja-Mir-199-P2-v1  Cli-Mir-199-P2-v1  Cmi-Mir-199-P2-v1  Cpi-Mir-199-P2-v1  Cpo-Mir-199-P2-v1  Dno-Mir-199-P2-v1  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2b-v1  Eca-Mir-199-P2-v1  Ete-Mir-199-P2-v1  Gga-Mir-199-P2-v1  Gja-Mir-199-P2-v1  Gmo-Mir-199-P2a-v1  Hsa-Mir-199-P2-v1  Laf-Mir-199-P2-v1  Lch-Mir-199-P2  Mal-Mir-199-P2a-v1  Mdo-Mir-199-P2-v1  Mml-Mir-199-P2-v1  Mmr-Mir-199-P2-v1  Mmu-Mir-199-P2-v1  Oan-Mir-199-P2-v1  Ocu-Mir-199-P2-v1  Pab-Mir-199-P2-v1  Pbv-Mir-199-P2-v1  Pma-Mir-199-o2-v1  Rno-Mir-199-P2-v1  Sha-Mir-199-P2-v1  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Tgu-Mir-199-P2-v1  Tni-Mir-199-P2a-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG21: 12007937-12007997 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P2-v1)		 Mir-199-P2-v1 LG21: 12007937-12007997 [-] Ensembl
Mir-199-P2-v2 LG21: 12007937-12007997 [-] Ensembl
Variant

Loc-Mir-199-P2-v1
Seed CCAGUGU
Precursor
(pre-Mir +30nt flank)		 
CAGGGAGUGCCCAGUGACCCGCCUCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAGUUGUGGUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGUGGGGGAGCUCGAGACAUCAAGA
Get precursor sequence
Structure
        10          20        30        40        50        60
CAGGGAGUGCCCAGUGA--|    CUC     C       U        C   U AGGAAG 
                   CCCGC   GCCUG CCAGUGU CAGACUAC UGU C      U
                   GGGUG   CGGAU GGUUACA GUCUGAUG ACA G      U
AGAACUACAGAGCUCGAGG^    UGU     U       C        -   U UUGGUG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-199-P2-v1_5p
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Co-mature sequence

Loc-Mir-199-P2-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Variant

Loc-Mir-199-P2-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
CAGGGAGUGCCCAGUGACCCGCCUCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAGUUGUGGUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGUGGGGGAGCUCGAGACAUCAAGA
Get precursor sequence
Structure
        10          20        30        40        50        60
CAGGGAGUGCCCAGUGA--|    CUC     C       U        C   U  GGAAG 
                   CCCGC   GCCUG CCAGUGU CAGACUAC UGU CA     U
                   GGGUG   CGGAU GGUUACA GUCUGAUG ACA GU     U
AGAACUACAGAGCUCGAGG^    UGU     U       C        -   U  UGGUG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-199-P2-v2_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Mature sequence

Loc-Mir-199-P2-v2_3p
mirBase accessionNone
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence