MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-199-P2

Family name MIR-199 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-199-1
Paralogues Gga-Mir-199-P1-v1 
Orthologues Aca-Mir-199-P2-v1  Ami-Mir-199-P2-v1  Bta-Mir-199-P2-v1  Cfa-Mir-199-P2-v1  Cja-Mir-199-P2-v1  Cli-Mir-199-P2-v1  Cmi-Mir-199-P2-v1  Cpi-Mir-199-P2-v1  Cpo-Mir-199-P2-v1  Dno-Mir-199-P2-v1  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2b-v1  Eca-Mir-199-P2-v1  Ete-Mir-199-P2-v1  Gja-Mir-199-P2-v1  Gmo-Mir-199-P2a-v1  Hsa-Mir-199-P2-v1  Laf-Mir-199-P2-v1  Lch-Mir-199-P2  Loc-Mir-199-P2-v1  Mal-Mir-199-P2a-v1  Mdo-Mir-199-P2-v1  Mml-Mir-199-P2-v1  Mmr-Mir-199-P2-v1  Mmu-Mir-199-P2-v1  Oan-Mir-199-P2-v1  Ocu-Mir-199-P2-v1  Pab-Mir-199-P2-v1  Pbv-Mir-199-P2-v1  Pma-Mir-199-o2-v1  Rno-Mir-199-P2-v1  Sha-Mir-199-P2-v1  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Tgu-Mir-199-P2-v1  Tni-Mir-199-P2a-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 17: 5405926-5405986 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P2-v1)		 Mir-199-P2-v1 17: 5405926-5405986 [+] UCSC Ensembl
Mir-199-P2-v2 17: 5405926-5405986 [+] UCSC Ensembl
Mir-199-P2-v3 17: 5405926-5405986 [+] UCSC Ensembl
Variant

Gga-Mir-199-P2-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
GAGCAGACCACAGAGGCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUACACCACACACUGCCA
Get precursor sequence
Structure
        10         20         30        40        50        60
GAGCAGACCACAGAGGC-    CUCC-|    C       U        C   U AGGACU 
                  UCCA     GUCUG CCAGUGU CAGACUAC UGU C      A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA G      C
ACCGUCACACACCACAUA    CGUGU^    U       C        -   U UUAGAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-199-P2-v1_5p*
mirBase accessionMIMAT0001152
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Proposed targets TargetScanVert: gga-miR-199-5p
miRDB: MIMAT0001152
Mature sequence

Gga-Mir-199-P2-v1_3p
mirBase accessionMIMAT0003721
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: gga-miR-199-3p
miRDB: MIMAT0003721
Variant

Gga-Mir-199-P2-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
GAGCAGACCACAGAGGCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUACACCACACACUGCCA
Get precursor sequence
Structure
        10         20         30        40        50        60
GAGCAGACCACAGAGGC-    CUCC-|    C       U        C   U  GGACU 
                  UCCA     GUCUG CCAGUGU CAGACUAC UGU CA     A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA GU     C
ACCGUCACACACCACAUA    CGUGU^    U       C        -   U  UAGAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-199-P2-v2_5p*
mirBase accessionMIMAT0001152
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Proposed targets TargetScanVert: gga-miR-199-5p
miRDB: MIMAT0001152
Mature sequence

Gga-Mir-199-P2-v2_3p
mirBase accessionMIMAT0003721
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: gga-miR-199-3p
miRDB: MIMAT0003721
Variant

Gga-Mir-199-P2-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
GAGCAGACCACAGAGGCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUACACCACACACUGCCA
Get precursor sequence
Structure
        10         20         30        40        50        60
GAGCAGACCACAGAGGC-    CUCC-|    C       U        C   UCAGGACU 
                  UCCA     GUCUG CCAGUGU CAGACUAC UGU        A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA        C
ACCGUCACACACCACAUA    CGUGU^    U       C        -   UGUUAGAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-199-P2-v3_5p*
mirBase accessionMIMAT0001152
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-199-5p
miRDB: MIMAT0001152
Mature sequence

Gga-Mir-199-P2-v3_3p
mirBase accessionMIMAT0003721
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: gga-miR-199-3p
miRDB: MIMAT0003721