MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-199-P2

Family name MIR-199 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-199b
Paralogues Mmu-Mir-199-P1-v1  Mmu-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P2-v1  Ami-Mir-199-P2-v1  Bta-Mir-199-P2-v1  Cfa-Mir-199-P2-v1  Cja-Mir-199-P2-v1  Cli-Mir-199-P2-v1  Cmi-Mir-199-P2-v1  Cpi-Mir-199-P2-v1  Cpo-Mir-199-P2-v1  Dno-Mir-199-P2-v1  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2b-v1  Eca-Mir-199-P2-v1  Ete-Mir-199-P2-v1  Gga-Mir-199-P2-v1  Gja-Mir-199-P2-v1  Gmo-Mir-199-P2a-v1  Hsa-Mir-199-P2-v1  Laf-Mir-199-P2-v1  Lch-Mir-199-P2  Loc-Mir-199-P2-v1  Mal-Mir-199-P2a-v1  Mdo-Mir-199-P2-v1  Mml-Mir-199-P2-v1  Mmr-Mir-199-P2-v1  Oan-Mir-199-P2-v1  Ocu-Mir-199-P2-v1  Pab-Mir-199-P2-v1  Pbv-Mir-199-P2-v1  Pma-Mir-199-o2-v1  Rno-Mir-199-P2-v1  Sha-Mir-199-P2-v1  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Tgu-Mir-199-P2-v1  Tni-Mir-199-P2a-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr2: 32318485-32318545 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P2-v1)		 Mir-199-P2-v1 chr2: 32318485-32318545 [+] UCSC Ensembl
Mir-199-P2-v2 chr2: 32318485-32318545 [+] UCSC Ensembl
Mir-199-P2-v3 chr2: 32318485-32318545 [+] UCSC Ensembl
Variant

Mmu-Mir-199-P2-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
AUGGACCAGAGGAUACCUCCACUCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCACCGU
Get precursor sequence
Structure
        10         20         30        40        50        60
AUGGACCAGAGGAUACC-    CU  -|    C       U        C   U AGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUAC UGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAUG ACA G      C
UGCCACGGCUCCCAGAUU    CG  U^    U       C        -   U UUAAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-199-P2-v1_5p*
mirBase accessionMIMAT0000672
Sequence 
0- CCCAGUGUUUAGACUACCUGUUC -23
Get sequence
Proposed targets microrna.org: MIMAT0000672
TargetScanVert: mmu-miR-199b-5p
miRDB: MIMAT0000672
Mature sequence

Mmu-Mir-199-P2-v1_3p
mirBase accessionMIMAT0004667
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0004667
TargetScanVert: mmu-miR-199b-3p
miRDB: MIMAT0004667
Variant

Mmu-Mir-199-P2-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
AUGGACCAGAGGAUACCUCCACUCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCACCGU
Get precursor sequence
Structure
        10         20         30        40        50        60
AUGGACCAGAGGAUACC-    CU  -|    C       U        C   U  GGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUAC UGU CA     C
                  GGGU  GG CGGAU GGUUACA GUCUGAUG ACA GU     C
UGCCACGGCUCCCAGAUU    CG  U^    U       C        -   U  UAAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-199-P2-v2_5p*
mirBase accessionMIMAT0000672
Sequence 
0- CCCAGUGUUUAGACUACCUGUUCA -24
Get sequence
Proposed targets microrna.org: MIMAT0000672
TargetScanVert: mmu-miR-199b-5p
miRDB: MIMAT0000672
Mature sequence

Mmu-Mir-199-P2-v2_3p
mirBase accessionMIMAT0004667
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0004667
TargetScanVert: mmu-miR-199b-3p
miRDB: MIMAT0004667
Variant

Mmu-Mir-199-P2-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
AUGGACCAGAGGAUACCUCCACUCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCACCGU
Get precursor sequence
Structure
        10         20         30        40        50        60
AUGGACCAGAGGAUACC-    CU  -|    C       U        C   UCAGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUAC UGU        C
                  GGGU  GG CGGAU GGUUACA GUCUGAUG ACA        C
UGCCACGGCUCCCAGAUU    CG  U^    U       C        -   UGUUAAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-199-P2-v3_5p*
mirBase accessionMIMAT0000672
Sequence 
0- CCCAGUGUUUAGACUACCUGUU -22
Get sequence
Proposed targets microrna.org: MIMAT0000672
TargetScanVert: mmu-miR-199b-5p
miRDB: MIMAT0000672
Mature sequence

Mmu-Mir-199-P2-v3_3p
mirBase accessionMIMAT0004667
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0004667
TargetScanVert: mmu-miR-199b-3p
miRDB: MIMAT0004667