MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-199-P2

Family name MIR-199 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-199-3
Paralogues Cpo-Mir-199-P1-v1  Cpo-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P2-v1  Ami-Mir-199-P2-v1  Bta-Mir-199-P2-v1  Cfa-Mir-199-P2-v1  Cja-Mir-199-P2-v1  Cli-Mir-199-P2-v1  Cmi-Mir-199-P2-v1  Cpi-Mir-199-P2-v1  Dno-Mir-199-P2-v1  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2b-v1  Eca-Mir-199-P2-v1  Ete-Mir-199-P2-v1  Gga-Mir-199-P2-v1  Gja-Mir-199-P2-v1  Gmo-Mir-199-P2a-v1  Hsa-Mir-199-P2-v1  Laf-Mir-199-P2-v1  Lch-Mir-199-P2  Loc-Mir-199-P2-v1  Mal-Mir-199-P2a-v1  Mdo-Mir-199-P2-v1  Mml-Mir-199-P2-v1  Mmr-Mir-199-P2-v1  Mmu-Mir-199-P2-v1  Oan-Mir-199-P2-v1  Ocu-Mir-199-P2-v1  Pab-Mir-199-P2-v1  Pbv-Mir-199-P2-v1  Pma-Mir-199-o2-v1  Rno-Mir-199-P2-v1  Sha-Mir-199-P2-v1  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Tgu-Mir-199-P2-v1  Tni-Mir-199-P2a-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_27: 3923324-3923384 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-199-P2-v1)		 Mir-199-P2-v1 scaffold_27: 3923324-3923384 [+] UCSC
Mir-199-P2-v2 scaffold_27: 3923324-3923384 [+] UCSC
Mir-199-P2-v3 scaffold_27: 3923324-3923384 [+] UCSC
Variant

Cpo-Mir-199-P2-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGUGCCGC
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Structure
        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    U AGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA G      C
CGCCGUGGCUCCCAGAUU    CG  U^    U       C       -    U UUAAAC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-199-P2-v1_5p*
mirBase accessionMIMAT0047088
Sequence 
0- CCCAGUGUUUAGACUAUCUGUUC -23
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Mature sequence

Cpo-Mir-199-P2-v1_3p
mirBase accessionMIMAT0047087
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
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Variant

Cpo-Mir-199-P2-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGUGCCGC
Get precursor sequence
Structure
        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    U  GGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU CA     C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA GU     C
CGCCGUGGCUCCCAGAUU    CG  U^    U       C       -    U  UAAAC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-199-P2-v2_5p*
mirBase accessionMIMAT0047088
Sequence 
0- CCCAGUGUUUAGACUAUCUGUUCA -24
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Mature sequence

Cpo-Mir-199-P2-v2_3p
mirBase accessionMIMAT0047087
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
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Variant

Cpo-Mir-199-P2-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGUGCCGC
Get precursor sequence
Structure
        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    UCAGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU        C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA        C
CGCCGUGGCUCCCAGAUU    CG  U^    U       C       -    UGUUAAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-199-P2-v3_5p*
mirBase accessionMIMAT0047088
Sequence 
0- CCCAGUGUUUAGACUAUCUGUU -22
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Mature sequence

Cpo-Mir-199-P2-v3_3p
mirBase accessionMIMAT0047087
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence