Mir-199-P2-v1

MirGeneDB ID

Bta-Mir-199-P2-v1

Family name

MIR-199 (all species)

Seed

CAGUAGU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-199a-2

Paralogues

Bta-Mir-199-P1-v1 Bta-Mir-199-P1-v2 Bta-Mir-199-P1-v3 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Bta-Mir-199-P3-v1 Bta-Mir-199-P3-v2 Bta-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dre-Mir-199-P2-v1 Dre-Mir-199-P2-v2 Dre-Mir-199-P2-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Xtr-Mir-199-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(bosTau8)

chr7: 16508929-16508991 [-] UCSC Ensembl

Clustered MiRNAs
(< 10kb from Mir-199-P2-v1)

Mir-199-P2-v1 chr7: 16508929-16508991 [-] UCSC Ensembl
Mir-199-P2-v2 chr7: 16508929-16508991 [-] UCSC Ensembl
Mir-199-P2-v3 chr7: 16508929-16508991 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGGGAUGGAUGGACAGCCGGCCCCGCCAACCCAGUGUUCAGACUACCUGUUCAGGGGGCUCUGAAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGGCAAGCGGCGCGUCGGGA

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACGGGAUGGAUGGACAG-  -|    C   AAC       U        C   U AGGGGGC 
                  CC GGCCC GCC   CCAGUGU CAGACUAC UGU C       U
                  GG UCGGG CGG   GGUUACA GUCUGAUG ACA G       C
AGGGCUGCGCGGCGAACG  U^    U   AUU       C        -   U UGUAAGU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-199-P2-v1_5p*

MirBase accession

MIMAT0003544

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

Get sequence

Validated targets

TargetScanVert: bta-miR-199a-5p

Mature sequence

Bta-Mir-199-P2-v1_3p

MirBase accession

MIMAT0003746

Sequence

41- ACAGUAGUCUGCACAUUGGUUA -63

Get sequence

Validated targets

TargetScanVert: bta-miR-199a-3p