Mir-199-P2-v1

MirGeneDB ID

Bta-Mir-199-P2

Family name

MIR-199 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-199b

Paralogues

Bta-Mir-199-P1-v1 Bta-Mir-199-P3-v1

Orthologues

Aca-Mir-199-P2-v1 Ami-Mir-199-P2-v1 Cfa-Mir-199-P2-v1 Cja-Mir-199-P2-v1 Cli-Mir-199-P2-v1 Cmi-Mir-199-P2-v1 Cpi-Mir-199-P2-v1 Cpo-Mir-199-P2-v1 Dno-Mir-199-P2-v1 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2b-v1 Eca-Mir-199-P2-v1 Ete-Mir-199-P2-v1 Gga-Mir-199-P2-v1 Gja-Mir-199-P2-v1 Gmo-Mir-199-P2a-v1 Hsa-Mir-199-P2-v1 Laf-Mir-199-P2-v1 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Mal-Mir-199-P2a-v1 Mdo-Mir-199-P2-v1 Mml-Mir-199-P2-v1 Mmr-Mir-199-P2-v1 Mmu-Mir-199-P2-v1 Oan-Mir-199-P2-v1 Ocu-Mir-199-P2-v1 Pab-Mir-199-P2-v1 Pbv-Mir-199-P2-v1 Pma-Mir-199-o2-v1 Rno-Mir-199-P2-v1 Sha-Mir-199-P2-v1 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Tgu-Mir-199-P2-v1 Tni-Mir-199-P2a-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037338.1: 98855761-98855821 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v1)

Mir-199-P2-v1 NC_037338.1: 98855761-98855821 [-] UCSC Ensembl
Mir-199-P2-v2 NC_037338.1: 98855761-98855821 [-] UCSC Ensembl
Mir-199-P2-v3 NC_037338.1: 98855761-98855821 [-] UCSC Ensembl

Variant

Bta-Mir-199-P2-v1

Seed

CAGUAGU

Precursor
(pre-Mir +30nt flank)

UGGAUCGUGGGACCCCCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
UGGAUCGUGGGACCCCC-    CU  -|    C       U       U    U AGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA G      C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U UUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-199-P2-v1_5p*

mirBase accession

MIMAT0003821

Sequence

0- CCCAGUGUUUAGACUAUCUGUUC -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-199b

Mature sequence

Bta-Mir-199-P2-v1_3p

mirBase accession

None

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Bta-Mir-199-P2-v2

Seed

ACAGUAG

Precursor
(pre-Mir +30nt flank)

UGGAUCGUGGGACCCCCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
UGGAUCGUGGGACCCCC-    CU  -|    C       U       U    U  GGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU CA     C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA GU     C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U  UAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-199-P2-v2_5p*

mirBase accession

MIMAT0003821

Sequence

0- CCCAGUGUUUAGACUAUCUGUUCA -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-199b

Mature sequence

Bta-Mir-199-P2-v2_3p

mirBase accession

None

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Bta-Mir-199-P2-v3

Seed

AGUAGUC

Precursor
(pre-Mir +30nt flank)

UGGAUCGUGGGACCCCCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
UGGAUCGUGGGACCCCC-    CU  -|    C       U       U    UCAGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU        C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA        C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    UGUUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-199-P2-v3_5p*

mirBase accession

MIMAT0003821

Sequence

0- CCCAGUGUUUAGACUAUCUGUU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-199b

Mature sequence

Bta-Mir-199-P2-v3_3p

mirBase accession

None

Sequence

40- CAGUAGUCUGCACAUUGGUUA -61

Get sequence