Mir-199-P2-v1

MirGeneDB ID

Eca-Mir-199-P2

Family name

MIR-199 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-199b

Paralogues

Eca-Mir-199-P1-v1 Eca-Mir-199-P3-v1

Orthologues

Aca-Mir-199-P2-v1 Ami-Mir-199-P2-v1 Bta-Mir-199-P2-v1 Cfa-Mir-199-P2-v1 Cja-Mir-199-P2-v1 Cli-Mir-199-P2-v1 Cmi-Mir-199-P2-v1 Cpi-Mir-199-P2-v1 Cpo-Mir-199-P2-v1 Dno-Mir-199-P2-v1 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2b-v1 Ete-Mir-199-P2-v1 Gga-Mir-199-P2-v1 Gja-Mir-199-P2-v1 Gmo-Mir-199-P2a-v1 Hsa-Mir-199-P2-v1 Laf-Mir-199-P2-v1 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Mal-Mir-199-P2a-v1 Mdo-Mir-199-P2-v1 Mml-Mir-199-P2-v1 Mmr-Mir-199-P2-v1 Mmu-Mir-199-P2-v1 Oan-Mir-199-P2-v1 Ocu-Mir-199-P2-v1 Pab-Mir-199-P2-v1 Pbv-Mir-199-P2-v1 Pma-Mir-199-o2-v1 Rno-Mir-199-P2-v1 Sha-Mir-199-P2-v1 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Tgu-Mir-199-P2-v1 Tni-Mir-199-P2a-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009172.1: 32139036-32139096 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v1)

Mir-199-P2-v1 CM009172.1: 32139036-32139096 [-] UCSC Ensembl
Mir-199-P2-v2 CM009172.1: 32139036-32139096 [-] UCSC Ensembl
Mir-199-P2-v3 CM009172.1: 32139036-32139096 [-] UCSC Ensembl

Variant

Eca-Mir-199-P2-v1

Seed

CAGUAGU

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    U AGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA G      C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U UUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-199-P2-v1_5p*

mirBase accession

MIMAT0013780

Sequence

0- CCCAGUGUUUAGACUAUCUGUUC -23

Get sequence

Mature sequence

Eca-Mir-199-P2-v1_3p

mirBase accession

MIMAT0013781

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Eca-Mir-199-P2-v2

Seed

ACAGUAG

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    U  GGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU CA     C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA GU     C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U  UAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-199-P2-v2_5p*

mirBase accession

MIMAT0013780

Sequence

0- CCCAGUGUUUAGACUAUCUGUUCA -24

Get sequence

Mature sequence

Eca-Mir-199-P2-v2_3p

mirBase accession

MIMAT0013781

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Eca-Mir-199-P2-v3

Seed

AGUAGUC

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    UCAGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU        C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA        C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    UGUUAAAC 
 .       110       100        90        80         70