Mir-199-P2a-v1

MirGeneDB ID

Tni-Mir-199-P2a

Family name

MIR-199 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-199-2

Paralogues

Tni-Mir-199-P1b-v1 Tni-Mir-199-P3-v1

Orthologues

Aca-Mir-199-P2-v1 Ami-Mir-199-P2-v1 Bta-Mir-199-P2-v1 Cfa-Mir-199-P2-v1 Cja-Mir-199-P2-v1 Cli-Mir-199-P2-v1 Cmi-Mir-199-P2-v1 Cpi-Mir-199-P2-v1 Cpo-Mir-199-P2-v1 Dno-Mir-199-P2-v1 Dre-Mir-199-P2a-v1 Eca-Mir-199-P2-v1 Ete-Mir-199-P2-v1 Gga-Mir-199-P2-v1 Gja-Mir-199-P2-v1 Gmo-Mir-199-P2a-v1 Hsa-Mir-199-P2-v1 Laf-Mir-199-P2-v1 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Mal-Mir-199-P2a-v1 Mdo-Mir-199-P2-v1 Mml-Mir-199-P2-v1 Mmr-Mir-199-P2-v1 Mmu-Mir-199-P2-v1 Oan-Mir-199-P2-v1 Ocu-Mir-199-P2-v1 Pab-Mir-199-P2-v1 Pbv-Mir-199-P2-v1 Pma-Mir-199-o2-v1 Rno-Mir-199-P2-v1 Sha-Mir-199-P2-v1 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Tgu-Mir-199-P2-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

4: 2900527-2900587 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2a-v1)

Mir-199-P2a-v1 4: 2900527-2900587 [-] UCSC Ensembl
Mir-199-P2a-v2 4: 2900527-2900587 [-] UCSC Ensembl
Mir-199-P2a-v3 4: 2900527-2900587 [-] UCSC Ensembl

Variant

Tni-Mir-199-P2a-v1

Seed

CAGUAGU

Precursor
(pre-Mir +30nt flank)

CAGACCGAGUUUGUCCACCCAGCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAGUAGUGGUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGCCCGGGUAAGCACAGGACGAGACG

Get precursor sequence

Structure

        10         20         30        40        50        60
CAGACCGAGUUUGUCCA-   A-|  C     C       U        C   U AGGAAG 
                  CCC  GCC GCCUG CCAGUGU CAGACUAC UGU C      U
                  GGG  CGG CGGAU GGUUACA GUCUGAUG ACA G      A
GCAGAGCAGGACACGAAU   CC^  U     U       C        -   U UUGGUG 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-199-P2a-v1_5p*

mirBase accession

MIMAT0002960

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

Get sequence

Mature sequence

Tni-Mir-199-P2a-v1_3p

mirBase accession

None

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Tni-Mir-199-P2a-v2

Seed

ACAGUAG

Precursor
(pre-Mir +30nt flank)

CAGACCGAGUUUGUCCACCCAGCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAGUAGUGGUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGCCCGGGUAAGCACAGGACGAGACG

Get precursor sequence

Structure

        10         20         30        40        50        60
CAGACCGAGUUUGUCCA-   A-|  C     C       U        C   U  GGAAG 
                  CCC  GCC GCCUG CCAGUGU CAGACUAC UGU CA     U
                  GGG  CGG CGGAU GGUUACA GUCUGAUG ACA GU     A
GCAGAGCAGGACACGAAU   CC^  U     U       C        -   U  UGGUG 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-199-P2a-v2_5p*

mirBase accession

MIMAT0002960

Sequence

0- CCCAGUGUUCAGACUACCUGUUCA -24

Get sequence

Mature sequence

Tni-Mir-199-P2a-v2_3p

mirBase accession

None

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Tni-Mir-199-P2a-v3

Seed

AGUAGUC

Precursor
(pre-Mir +30nt flank)

CAGACCGAGUUUGUCCACCCAGCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAGUAGUGGUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGCCCGGGUAAGCACAGGACGAGACG

Get precursor sequence

Structure

        10         20         30        40        50        60
CAGACCGAGUUUGUCCA-   A-|  C     C       U        C   UCAGGAAG 
                  CCC  GCC GCCUG CCAGUGU CAGACUAC UGU        U
                  GGG  CGG CGGAU GGUUACA GUCUGAUG ACA        A
GCAGAGCAGGACACGAAU   CC^  U     U       C        -   UGUUGGUG 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-199-P2a-v3_5p*

mirBase accession

MIMAT0002960

Sequence

0- CCCAGUGUUCAGACUACCUGUU -22

Get sequence

Mature sequence

Tni-Mir-199-P2a-v3_3p

mirBase accession

None

Sequence

40- CAGUAGUCUGCACAUUGGUUA -61

Get sequence