MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-199-P3-v1

Family name MIR-199 (all species)
Seed CCAGUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Loc-Mir-199-P2-v1  Loc-Mir-199-P2-v2  Loc-Mir-199-P3-v2 
Orthologues Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v2  Aca-Mir-199-P3-v3  Ami-Mir-199-P3-v1  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gja-Mir-199-P3-v1  Gja-Mir-199-P3-v2  Gja-Mir-199-P3-v3  Gmo-Mir-199-P3-v1  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Lch-Mir-199-P3  Mal-Mir-199-P3-v1  Mal-Mir-199-P3-v2  Mal-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Mun-Mir-199-P3-v1  Mun-Mir-199-P3-v2  Mun-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Pbv-Mir-199-P3-v1  Pbv-Mir-199-P3-v2  Pbv-Mir-199-P3-v3  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG6: 19340903-19340963 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCAUGCAGACCUCAUUCCCCUUCGCCUCCCCAGUGUUCAGACUACCUGUUCAUUAGGCUAUAGGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCAGGGACUAGCUUCAAGGAGCCA
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Structure
        10        20          30        40        50        60
AGCCAUGCAGACCUCAUU   --| UC    CC       U        C   U AUUAGG 
                  CCC  CU  GCCU  CCAGUGU CAGACUAC UGU C      C
                  GGG  GG  CGGA  GGUUACA GUCUGAUG ACA G      U
ACCGAGGAACUUCGAUCA   AC^ GU    UU       C        -   U UGGAUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-199-P3-v1_5p
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
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Co-mature sequence

Loc-Mir-199-P3-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
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