MirGeneDB

MirGeneDB ID

Ami-Mir-199-P3-v1

Family name MIR-199 (all species)
Seed CAGUAGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-199-2
Paralogues Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Ami-Mir-199-P2-v1  Ami-Mir-199-P2-v2  Ami-Mir-199-P2-v3  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v2  Aca-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cli-Mir-199-P3-v1  Cli-Mir-199-P3-v2  Cli-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dno-Mir-199-P3-v1  Dno-Mir-199-P3-v2  Dno-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gga-Mir-199-P3-v1  Gga-Mir-199-P3-v2  Gga-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Oan-Mir-199-P3-v1  Oan-Mir-199-P3-v2  Oan-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Rno-Mir-199-P3-v1  Rno-Mir-199-P3-v2  Rno-Mir-199-P3-v3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Sto-Mir-199-P3-v1  Sto-Mir-199-P3-v2  Sto-Mir-199-P3-v3  Tgu-Mir-199-P3-v1  Tgu-Mir-199-P3-v2  Tgu-Mir-199-P3-v3  Xtr-Mir-199-P3-v1  Xtr-Mir-199-P3-v2  Xtr-Mir-199-P3-v3 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(allMis1)
JH739065: 229894-229954 [+] UCSC
Clustered MiRNAs
(< 10kb from Mir-199-P3-v1)
Mir-199-P3-v1 JH739065: 229894-229954 [+] UCSC
Mir-199-P3-v2 JH739065: 229894-229954 [+] UCSC
Mir-199-P3-v3 JH739065: 229894-229954 [+] UCSC
Mir-214-v1 JH739065: 235809-235871 [+] UCSC
Mir-214-v2 JH739065: 235809-235871 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UAGAAGCGUCCGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAAAGCAACGGCAUGGAC
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Structure
        10          20        30        40        50        60
UAGAAGCGUCCGGAGAU-  -|    C   GCC       U        C   U AGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU C      A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA G      U
CAGGUACGGCAACGAAAG  A^    U   AUU       C        -   U UUGUCG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-199-P3-v1_5p*

MirBase accessionMIMAT0038216
Sequence
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Mature sequence

Ami-Mir-199-P3-v1_3p

MirBase accessionMIMAT0038217
Sequence
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence