MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-199-P3

Family name MIR-199 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-199-P1  Lch-Mir-199-P2 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH126759.1: 1560375-1560435 [+] Ensembl
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
GAUCGGAGCGCUCGAUUCUGACCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAAGCCAAAGGUGGACAGUAGUCUGCACAUUGGUUAGGCUGGGCAAGAGAAAGCAACGUCUGCAGG
Get precursor sequence
Structure
        10          20        30        40        50        60
GAUCGGAGCGCUCGAUU--| GA   C     C       U        C     AGGAAG 
                   CU  CCC GCCUG CCAGUGU CAGACUAC UGUUC      C
                   GA  GGG CGGAU GGUUACA GUCUGAUG ACAGG      C
GGACGUCUGCAACGAAAGA^ AC   U     U       C        -     UGGAAA 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-199-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Mature sequence

Lch-Mir-199-P3_3p (predicted)
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence