| MirGeneDB ID | Xla-Mir-199-P3b |
|---|
| Family name |
MIR-199 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-199-P1c-v1
Xla-Mir-199-P1d-v1
Xla-Mir-199-P3a
|
|---|
| Orthologues |
Aca-Mir-199-P3-v1
Ami-Mir-199-P3-v1
Bta-Mir-199-P3-v1
Cfa-Mir-199-P3-v1
Cja-Mir-199-P3-v1
Cpi-Mir-199-P3-v1
Cpo-Mir-199-P3-v1
Dre-Mir-199-P3-v1
Eca-Mir-199-P3-v1
Ete-Mir-199-P3-v1
Gja-Mir-199-P3-v1
Gmo-Mir-199-P3-v1
Hsa-Mir-199-P3-v1
Laf-Mir-199-P3-v1
Lch-Mir-199-P3
Loc-Mir-199-P3-v1
Mal-Mir-199-P3-v1
Mdo-Mir-199-P3-v1
Mml-Mir-199-P3-v1
Mmr-Mir-199-P3-v1
Mmu-Mir-199-P3-v1
Mun-Mir-199-P3-v1
Neu-Mir-199-P3-v1
Ocu-Mir-199-P3-v1
Pab-Mir-199-P3-v1
Pbv-Mir-199-P3-v1
Pma-Mir-199-o3
Sha-Mir-199-P3-v1
Tni-Mir-199-P3-v1
Xtr-Mir-199-P3
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694811.1: 452651-452711 [-]
UCSC
Ensembl
|
|---|
| Seed |
CCAGUGU |
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAUCCAGAGAGAUGGCUGGUCCCGUUCCCCCAGUGUUCAGACUACGUGUUCGUUGCACAGUACGUGAACAGUAGUCUACACACUGGUUAAACUGGGCCACACGCUCAACUGGGCAGUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAUCCAGAGAGAUGGC--| C CCC UC G GUUGCA
UGGUCC GUU CCAGUGU AGACUAC UGUUC C
ACCGGG CAA GGUCACA UCUGAUG ACAAG A
GUUGACGGGUCAACUCGCAC^ U AUU CA - UGCAUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-199-P3b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCCAGUGUUCAGACUACGUGUUC -23
Get sequence
|
|---|
| Star sequence |
Xla-Mir-199-P3b_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- ACAGUAGUCUACACACUGGUUA -61
Get sequence
|
|---|
