Mir-199-o3

MirGeneDB ID

Pma-Mir-199-o3

Family name

MIR-199 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-199-o1 Pma-Mir-199-o2-v1

Orthologues

Aca-Mir-199-P3-v1 Ami-Mir-199-P3-v1 Bta-Mir-199-P3-v1 Cfa-Mir-199-P3-v1 Cja-Mir-199-P3-v1 Cpi-Mir-199-P3-v1 Cpo-Mir-199-P3-v1 Dre-Mir-199-P3-v1 Eca-Mir-199-P3-v1 Ete-Mir-199-P3-v1 Gja-Mir-199-P3-v1 Gmo-Mir-199-P3-v1 Hsa-Mir-199-P3-v1 Laf-Mir-199-P3-v1 Lch-Mir-199-P3 Loc-Mir-199-P3-v1 Mal-Mir-199-P3-v1 Mdo-Mir-199-P3-v1 Mml-Mir-199-P3-v1 Mmr-Mir-199-P3-v1 Mmu-Mir-199-P3-v1 Mun-Mir-199-P3-v1 Neu-Mir-199-P3-v1 Ocu-Mir-199-P3-v1 Pab-Mir-199-P3-v1 Pbv-Mir-199-P3-v1 Sha-Mir-199-P3-v1 Tni-Mir-199-P3-v1 Xla-Mir-199-P3a Xla-Mir-199-P3b Xtr-Mir-199-P3

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046127.1: 1016358-1016419 [+] UCSC Ensembl

Seed

CCAGUGU

Precursor
(pre-Mir +30nt flank)

GAGGCAGCCGCCGAGAUCCGAGCCAGGCUUCCCAGUGUGCCGACUGCCUGUGCCGACACUCGACAAGUGCACAGUCGUCUGCACACUGGCCACGCUGCACCUCGACGAGCCGCUGCCGCUGC

Get precursor sequence

Structure

        10        20         30         40        50        60 
GAGGCAGCCGCCGAGAUC    CCA-   UUC-|        C   U C      CGACACU 
                  CGAG    GGC    CCAGUGUGC GAC G CUGUGC       \
                  GCUC    UCG    GGUCACACG CUG C GACACG       C
CGUCGCCGUCGCCGAGCA    CACG   CACC^        U   - U      UGAACAG 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-199-o3_5p

mirBase accession

None

Sequence

0- CCCAGUGUGCCGACUGCCUGUGC -23

Get sequence

Star sequence

Pma-Mir-199-o3_3p* (predicted)

mirBase accession

None

Sequence

40- ACAGUCGUCUGCACACUGGCCA -62

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