MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-199-o3

Family name MIR-199 (all species)
Seed CCAGUGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-199-o1  Pma-Mir-199-o2-v1  Pma-Mir-199-o2-v2  Pma-Mir-199-o2-v3 
Orthologues Aca-Mir-199-P3-v1  Aca-Mir-199-P3-v2  Aca-Mir-199-P3-v3  Ami-Mir-199-P3-v1  Ami-Mir-199-P3-v2  Ami-Mir-199-P3-v3  Bta-Mir-199-P3-v1  Bta-Mir-199-P3-v2  Bta-Mir-199-P3-v3  Cfa-Mir-199-P3-v1  Cfa-Mir-199-P3-v2  Cfa-Mir-199-P3-v3  Cpi-Mir-199-P3-v1  Cpi-Mir-199-P3-v2  Cpi-Mir-199-P3-v3  Cpo-Mir-199-P3-v1  Cpo-Mir-199-P3-v2  Cpo-Mir-199-P3-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3  Ete-Mir-199-P3-v1  Ete-Mir-199-P3-v2  Ete-Mir-199-P3-v3  Gja-Mir-199-P3-v1  Gja-Mir-199-P3-v2  Gja-Mir-199-P3-v3  Gmo-Mir-199-P3-v1  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3  Hsa-Mir-199-P3-v1  Hsa-Mir-199-P3-v2  Hsa-Mir-199-P3-v3  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Loc-Mir-199-P3-v2  Mal-Mir-199-P3-v1  Mal-Mir-199-P3-v2  Mal-Mir-199-P3-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3  Mml-Mir-199-P3-v1  Mml-Mir-199-P3-v2  Mml-Mir-199-P3-v3  Mmu-Mir-199-P3-v1  Mmu-Mir-199-P3-v2  Mmu-Mir-199-P3-v3  Mun-Mir-199-P3-v1  Mun-Mir-199-P3-v2  Mun-Mir-199-P3-v3  Ocu-Mir-199-P3-v1  Ocu-Mir-199-P3-v2  Ocu-Mir-199-P3-v3  Pbv-Mir-199-P3-v1  Pbv-Mir-199-P3-v2  Pbv-Mir-199-P3-v3  Sha-Mir-199-P3-v1  Sha-Mir-199-P3-v2  Sha-Mir-199-P3-v3  Tni-Mir-199-P3-v1  Tni-Mir-199-P3-v2  Tni-Mir-199-P3-v3  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046127.1: 1016358-1016419 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGCAGCCGCCGAGAUCCGAGCCAGGCUUCCCAGUGUGCCGACUGCCUGUGCCGACACUCGACAAGUGCACAGUCGUCUGCACACUGGCCACGCUGCACCUCGACGAGCCGCUGCCGCUGC
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Structure
        10        20         30         40        50        60 
GAGGCAGCCGCCGAGAUC    CCA-   UUC-|        C   U C      CGACACU 
                  CGAG    GGC    CCAGUGUGC GAC G CUGUGC       \
                  GCUC    UCG    GGUCACACG CUG C GACACG       C
CGUCGCCGUCGCCGAGCA    CACG   CACC^        U   - U      UGAACAG 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-199-o3_5p

mirBase accessionNone
Sequence
0- CCCAGUGUGCCGACUGCCUGUGC -23
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Star sequence

Pma-Mir-199-o3_3p* (predicted)

mirBase accessionNone
Sequence
40- ACAGUCGUCUGCACACUGGCCA -62
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