MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-199-o1

Family name MIR-199 (all species)
Seed CCAGUGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-199a
Paralogues Pma-Mir-199-o2-v1  Pma-Mir-199-o2-v2  Pma-Mir-199-o2-v3  Pma-Mir-199-o3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v2  Bta-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P1-v3  Cmi-Mir-199-P1-v1  Cmi-Mir-199-P1-v2  Cmi-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Dre-Mir-199-P1a-v1  Dre-Mir-199-P1a-v2  Dre-Mir-199-P1a-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gja-Mir-199-P1-v1  Gja-Mir-199-P1-v2  Gja-Mir-199-P1-v3  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1a-v2  Gmo-Mir-199-P1a-v3  Gmo-Mir-199-P1b-v1  Gmo-Mir-199-P1b-v2  Gmo-Mir-199-P1b-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1a-v2  Mal-Mir-199-P1a-v3  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mal-Mir-199-P1b-v2  Mal-Mir-199-P1b-v3  Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P1-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Mun-Mir-199-P1-v1  Mun-Mir-199-P1-v2  Mun-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Pbv-Mir-199-P1-v1  Pbv-Mir-199-P1-v2  Pbv-Mir-199-P1-v3  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3  Tni-Mir-199-P1b-v1  Tni-Mir-199-P1b-v2  Tni-Mir-199-P1b-v3  Xla-Mir-199-P1c-v1  Xla-Mir-199-P1c-v2  Xla-Mir-199-P1c-v3  Xla-Mir-199-P1d-v1  Xla-Mir-199-P1d-v2  Xla-Mir-199-P1d-v3  Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046090.1: 4834920-4834980 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACAAGAUGAAGAAUUGCCGUUCCGUCUCCCCAGUGUUCAGACUACCUGUUCAGGAGGUUAAUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGAGCACGGCCAUUCAUCUCAAAAACU
Get precursor sequence
Structure
        10        20          30        40        50        60
AGACAAGAUGAAGAAUUGCC--|   C    CC       U        C   U AGGAGG 
                      GUUC GUCU  CCAGUGU CAGACUAC UGU C      U
                      CGAG CAGA  GGUUACA GUCUGAUG ACA G      U
UCAAAAACUCUACUUACCGGCA^   U    UU       C        -   U UUGUAA 
 .       110       100        90        80         70
Deep sequencing
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CommentThere are Dicer cuts +1 and -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-199-o1_5p

mirBase accessionMIMAT0019505
Sequence
0- CCCAGUGUUCAGACUACCUGUUC -23
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Star sequence

Pma-Mir-199-o1_3p*

mirBase accessionMIMAT0019506
Sequence
39- ACAGUAGUCUGCACAUUGGUUA -61
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