Mir-199-o1

MirGeneDB ID

Pma-Mir-199-o1

Family name

MIR-199 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-199a

Paralogues

Pma-Mir-199-o2-v1 Pma-Mir-199-o3

Orthologues

Aca-Mir-199-P1-v1 Ami-Mir-199-P1-v1 Bta-Mir-199-P1-v1 Cfa-Mir-199-P1-v1 Cja-Mir-199-P1-v1 Cli-Mir-199-P1-v1 Cmi-Mir-199-P1-v1 Cpi-Mir-199-P1-v1 Cpo-Mir-199-P1-v1 Dno-Mir-199-P1-v1 Dre-Mir-199-P1a-v1 Eca-Mir-199-P1-v1 Ete-Mir-199-P1-v1 Gga-Mir-199-P1-v1 Gja-Mir-199-P1-v1 Gmo-Mir-199-P1a-v1 Gmo-Mir-199-P1b-v1 Hsa-Mir-199-P1-v1 Laf-Mir-199-P1-v1 Lch-Mir-199-P1 Loc-Mir-199-P1-v1 Mal-Mir-199-P1a-v1 Mal-Mir-199-P1b-as Mal-Mir-199-P1b-v1 Mdo-Mir-199-P1-v1 Mml-Mir-199-P1-v1 Mmr-Mir-199-P1-v1 Mmu-Mir-199-P1-v1 Mun-Mir-199-P1-v1 Neu-Mir-199-P1-v1 Oan-Mir-199-P1-v1 Ocu-Mir-199-P1-v1 Pab-Mir-199-P1-v1 Pbv-Mir-199-P1-v1 Rno-Mir-199-P1-v1 Sha-Mir-199-P1-v1 Spt-Mir-199-P1 Sto-Mir-199-P1-v1 Tgu-Mir-199-P1-v1 Tni-Mir-199-P1b-v1 Xla-Mir-199-P1c-v1 Xla-Mir-199-P1d-v1 Xtr-Mir-199-P1-v1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046090.1: 4834920-4834980 [+] UCSC Ensembl

Seed

CCAGUGU

Precursor
(pre-Mir +30nt flank)

AGACAAGAUGAAGAAUUGCCGUUCCGUCUCCCCAGUGUUCAGACUACCUGUUCAGGAGGUUAAUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGAGCACGGCCAUUCAUCUCAAAAACU

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Structure

        10        20          30        40        50        60
AGACAAGAUGAAGAAUUGCC--|   C    CC       U        C   U AGGAGG 
                      GUUC GUCU  CCAGUGU CAGACUAC UGU C      U
                      CGAG CAGA  GGUUACA GUCUGAUG ACA G      U
UCAAAAACUCUACUUACCGGCA^   U    UU       C        -   U UUGUAA 
 .       110       100        90        80         70

Deep sequencing

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Comment

There are Dicer cuts +1 and -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-199-o1_5p

mirBase accession

MIMAT0019505

Sequence

0- CCCAGUGUUCAGACUACCUGUUC -23

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Star sequence

Pma-Mir-199-o1_3p*

mirBase accession

MIMAT0019506

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

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