MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-199-P1b-v1

Family name MIR-199 (all species)
Seed CAGUAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-199-4
Paralogues Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1a-v2  Gmo-Mir-199-P1a-v3  Gmo-Mir-199-P1b-v2  Gmo-Mir-199-P1b-v3  Gmo-Mir-199-P2a-v1  Gmo-Mir-199-P2a-v2  Gmo-Mir-199-P2a-v3  Gmo-Mir-199-P3-v1  Gmo-Mir-199-P3-v2  Gmo-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v2  Bta-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P1-v3  Cmi-Mir-199-P1-v1  Cmi-Mir-199-P1-v2  Cmi-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gja-Mir-199-P1-v1  Gja-Mir-199-P1-v2  Gja-Mir-199-P1-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mal-Mir-199-P1b-v2  Mal-Mir-199-P1b-v3  Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P1-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Mun-Mir-199-P1-v1  Mun-Mir-199-P1-v2  Mun-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Pbv-Mir-199-P1-v1  Pbv-Mir-199-P1-v2  Pbv-Mir-199-P1-v3  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3  Tni-Mir-199-P1b-v1  Tni-Mir-199-P1b-v2  Tni-Mir-199-P1b-v3  Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig309706: 96-156 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1b-v1)
Mir-199-P1b-v1 contig309706: 96-156 [-] UCSC Ensembl
Mir-199-P1b-v2 contig309706: 96-156 [-] UCSC Ensembl
Mir-199-P1b-v3 contig309706: 96-156 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUCCAGUUGGUGAAUCCGGUUCCGUCUACCCAGUGUUCAGACUACCUGUUCAUUGUUAUACUGGUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAUGGGCCCUCCUCUGUCAAAAG
Get precursor sequence
Structure
        10         20         30        40        50        60
GUGUCCAGUUGGUGAAU-   -|   C     C       U        C   U AUUGUU 
                  CCG GUUC GUCUA CCAGUGU CAGACUAC UGU C      A
                  GGU CGGG CAGAU GGUUACA GUCUGAUG ACA G      U
GAAAACUGUCUCCUCCCG   A^   U     U       C        -   U UGGUCA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-199-P1b-v1_5p*

mirBase accessionMIMAT0044025
Sequence
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Gmo-Mir-199-P1b-v1_3p

mirBase accessionMIMAT0044026
Sequence
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence