MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-199-P1

Family name MIR-199 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-199-P2  Lch-Mir-199-P3 
Orthologues Aca-Mir-199-P1-v1  Ami-Mir-199-P1-v1  Bta-Mir-199-P1-v1  Cfa-Mir-199-P1-v1  Cja-Mir-199-P1-v1  Cli-Mir-199-P1-v1  Cmi-Mir-199-P1-v1  Cpi-Mir-199-P1-v1  Cpo-Mir-199-P1-v1  Dno-Mir-199-P1-v1  Dre-Mir-199-P1a-v1  Eca-Mir-199-P1-v1  Ete-Mir-199-P1-v1  Gga-Mir-199-P1-v1  Gja-Mir-199-P1-v1  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1b-v1  Hsa-Mir-199-P1-v1  Laf-Mir-199-P1-v1  Loc-Mir-199-P1-v1  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mdo-Mir-199-P1-v1  Mml-Mir-199-P1-v1  Mmr-Mir-199-P1-v1  Mmu-Mir-199-P1-v1  Mun-Mir-199-P1-v1  Neu-Mir-199-P1-v1  Oan-Mir-199-P1-v1  Ocu-Mir-199-P1-v1  Pab-Mir-199-P1-v1  Pbv-Mir-199-P1-v1  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Sha-Mir-199-P1-v1  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Tgu-Mir-199-P1-v1  Tni-Mir-199-P1b-v1  Xla-Mir-199-P1c-v1  Xla-Mir-199-P1d-v1  Xtr-Mir-199-P1-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH127017.1: 811620-811680 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1)		 Mir-214 JH127017.1: 804756-804818 [-] Ensembl
Mir-199-P1 JH127017.1: 811620-811680 [-] Ensembl
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
ACCCGUUUCCAGUUGGUCCUGCUCCGUCGGCCCAGUGUUCAGACUACCUGUUCAGGACAAUACUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAUGGGAAAGCAGCGGCAUGGAA
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Structure
        10          20        30        40        50        60
ACCCGUUUCCAGUUGGU-  -|    C   GGC       U        C   U AGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU C      A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA G      U
AAGGUACGGCGACGAAAG  U^    U   AUU       C        -   U UUGUCA 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-199-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Lch-Mir-199-P1_3p (predicted)
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence