| MirGeneDB ID | Spt-Mir-199-P1 |
|---|---|
| Family name | MIR-199 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-199-P2 |
| Orthologues | Aca-Mir-199-P1-v1 Ami-Mir-199-P1-v1 Bta-Mir-199-P1-v1 Cfa-Mir-199-P1-v1 Cja-Mir-199-P1-v1 Cli-Mir-199-P1-v1 Cmi-Mir-199-P1-v1 Cpi-Mir-199-P1-v1 Cpo-Mir-199-P1-v1 Dno-Mir-199-P1-v1 Dre-Mir-199-P1a-v1 Eca-Mir-199-P1-v1 Ete-Mir-199-P1-v1 Gga-Mir-199-P1-v1 Gja-Mir-199-P1-v1 Gmo-Mir-199-P1a-v1 Gmo-Mir-199-P1b-v1 Hsa-Mir-199-P1-v1 Laf-Mir-199-P1-v1 Lch-Mir-199-P1 Loc-Mir-199-P1-v1 Mal-Mir-199-P1a-v1 Mal-Mir-199-P1b-as Mal-Mir-199-P1b-v1 Mdo-Mir-199-P1-v1 Mml-Mir-199-P1-v1 Mmr-Mir-199-P1-v1 Mmu-Mir-199-P1-v1 Mun-Mir-199-P1-v1 Neu-Mir-199-P1-v1 Oan-Mir-199-P1-v1 Ocu-Mir-199-P1-v1 Pab-Mir-199-P1-v1 Pbv-Mir-199-P1-v1 Pma-Mir-199-o1 Rno-Mir-199-P1-v1 Sha-Mir-199-P1-v1 Sto-Mir-199-P1-v1 Tgu-Mir-199-P1-v1 Tni-Mir-199-P1b-v1 Xla-Mir-199-P1c-v1 Xla-Mir-199-P1d-v1 Xtr-Mir-199-P1-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01000109.1: 948310-948370 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-199-P1) |
Mir-214
QEPC01000109.1: 942564-942626 [-]
UCSC
Ensembl
Mir-199-P1 QEPC01000109.1: 948310-948370 [-] UCSC Ensembl |
| Seed | CAGUAGU |
| Precursor (pre-Mir +30nt flank) |
UAGAAGCGUCCGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAAAGCAACGGCAUGGACGet precursor sequence |
| Structure | 10 20 30 40 50 60 UAGAAGCGUCCGGAGAU- -| C GCC U C U AGGACA CC UGCUC GUC CCAGUGU CAGACUAC UGU C A GG ACGGG CAG GGUUACA GUCUGAUG ACA G U CAGGUACGGCAACGAAAG A^ U AUU C - U UUGUCG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-199-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
|
| Mature sequence | Spt-Mir-199-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
|
