| MirGeneDB ID | Spt-Mir-214 |
|---|---|
| Family name | MIR-214 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-214-v1 Ami-Mir-214-v1 Bta-Mir-214-v1 Cfa-Mir-214-v1 Cja-Mir-214 Cli-Mir-214-v1 Cmi-Mir-214-v1 Cpi-Mir-214-v1 Cpo-Mir-214-v1 Dno-Mir-214-v1 Dre-Mir-214-P1-v1 Eca-Mir-214-v1 Ete-Mir-214-v1 Gga-Mir-214-v1 Gja-Mir-214-v1 Gmo-Mir-214-P1 Gmo-Mir-214-P2-v1 Hsa-Mir-214-v1 Laf-Mir-214 Lch-Mir-214 Loc-Mir-214-v1 Mal-Mir-214-P1-v1 Mal-Mir-214-P2-v1 Mdo-Mir-214-v1 Mml-Mir-214-v1 Mmr-Mir-214-v1 Mmu-Mir-214-v1 Mun-Mir-214 Oan-Mir-214-v1 Ocu-Mir-214-v1 Pab-Mir-214 Pbv-Mir-214-v1 Rno-Mir-214-v1 Sha-Mir-214-v1 Sto-Mir-214-v1 Tgu-Mir-214-v1 Tni-Mir-214-P1-v1 Tni-Mir-214-P2-v1 Xla-Mir-214-P3-v1 Xla-Mir-214-P4-v1 Xtr-Mir-214-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01000109.1: 942564-942626 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-214) |
Mir-214
QEPC01000109.1: 942564-942626 [-]
UCSC
Ensembl
Mir-199-P1 QEPC01000109.1: 948310-948370 [-] UCSC Ensembl |
| Seed | CAGCAGG |
| Precursor (pre-Mir +30nt flank) |
GGGACUGGCUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAGACAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGGACUGGCUGGACAGA--| U ACA AGAACAUC GUUGUCAUGUG CUGCCUGUCU CUUGCUGUGC \ CAACAGUACAC GACGGACAGA GGACGACAUG C ACAGACAGUAAGUCCGACC^ U CAC UCCACUCU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Spt-Mir-214_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
|
| Mature sequence | Spt-Mir-214_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence
|
