MirGeneDB

MirGeneDB ID

Ami-Mir-214-v1

Family name MIR-214 (all species)
Seed CAGCAGG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-214
Paralogues Ami-Mir-214-v2 
Orthologues Aca-Mir-214-v1  Bta-Mir-214-v1  Cfa-Mir-214-v1  Cli-Mir-214-v1  Cpi-Mir-214-v1  Cpo-Mir-214-v1  Dno-Mir-214-v1  Dre-Mir-214-v1  Ete-Mir-214-v1  Gga-Mir-214-v1  Hsa-Mir-214-v1  Mdo-Mir-214-v1  Mml-Mir-214-v1  Mmu-Mir-214-v1  Oan-Mir-214-v1  Ocu-Mir-214-v1  Rno-Mir-214-v1  Sha-Mir-214-v1  Sto-Mir-214-v1  Tgu-Mir-214-v1  Xtr-Mir-214-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(allMis1)
JH739065: 235809-235871 [+] UCSC
Clustered MiRNAs
(< 10kb from Mir-214-v1)
Mir-199-P3-v1 JH739065: 229894-229954 [+] UCSC
Mir-199-P3-v2 JH739065: 229894-229954 [+] UCSC
Mir-199-P3-v3 JH739065: 229894-229954 [+] UCSC
Mir-214-v1 JH739065: 235809-235871 [+] UCSC
Mir-214-v2 JH739065: 235809-235871 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGGAUUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCACUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
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Structure
        10          20        30        40        50        60 
GGGAUUGGCUGGACGGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCAACAGUAAGUCCGACC^          U          CAC          UCCACUCA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Ami-Mir-214-v1_5p*

MirBase accessionMIMAT0038238
Sequence
0- UGCCUGUCUACACUUGCUGUGC -22
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Mature sequence

Ami-Mir-214-v1_3p

MirBase accessionMIMAT0038239
Sequence
41- ACAGCAGGCACAGACAGGCAGU -63
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