MirGeneDB

MirGeneDB ID

Mmu-Mir-214-v1

Family name MIR-214 (all species)
Seed CAGCAGG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-214
Paralogues Mmu-Mir-214-v2 
Orthologues Aca-Mir-214-v1  Ami-Mir-214-v1  Bta-Mir-214-v1  Cfa-Mir-214-v1  Cli-Mir-214-v1  Cpi-Mir-214-v1  Cpo-Mir-214-v1  Dno-Mir-214-v1  Dre-Mir-214-v1  Ete-Mir-214-v1  Gga-Mir-214-v1  Hsa-Mir-214-v1  Mdo-Mir-214-v1  Mml-Mir-214-v1  Oan-Mir-214-v1  Ocu-Mir-214-v1  Rno-Mir-214-v1  Sha-Mir-214-v1  Sto-Mir-214-v1  Tgu-Mir-214-v1  Xtr-Mir-214-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(mm10)
chr1: 162223397-162223459 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-214-v1)
Mir-199-P3-v1 chr1: 162217844-162217904 [+] UCSC Ensembl
Mir-199-P3-v2 chr1: 162217844-162217904 [+] UCSC Ensembl
Mir-199-P3-v3 chr1: 162217844-162217904 [+] UCSC Ensembl
Mir-214-v1 chr1: 162223397-162223459 [+] UCSC Ensembl
Mir-214-v2 chr1: 162223397-162223459 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCCUGGCUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACCACCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGGCCUGGCUGGACAGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCACCAGUAAGUCCGACC^          U          CAC          UCCACUCG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Br Ce Ce Es He Ki Li Lu Ov Pa Sk Sp Te Em
Star sequence

Mmu-Mir-214-v1_5p*

MirBase accessionMIMAT0004664
Sequence
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
Validated targets microrna.org: MIMAT0004664
TargetScanVert: mmu-miR-214-5p
miRDB: MIMAT0004664
Mature sequence

Mmu-Mir-214-v1_3p

MirBase accessionMIMAT0000661
Sequence
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence
Validated targets microrna.org: MIMAT0000661
TargetScanVert: mmu-miR-214-3p
miRDB: MIMAT0000661