MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-214

Family name MIR-214 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-214
Paralogues
Orthologues Aca-Mir-214-v1  Ami-Mir-214-v1  Bta-Mir-214-v1  Cfa-Mir-214-v1  Cja-Mir-214  Cli-Mir-214-v1  Cmi-Mir-214-v1  Cpi-Mir-214-v1  Cpo-Mir-214-v1  Dno-Mir-214-v1  Eca-Mir-214-v1  Ete-Mir-214-v1  Gga-Mir-214-v1  Gja-Mir-214-v1  Hsa-Mir-214-v1  Laf-Mir-214  Lch-Mir-214  Loc-Mir-214-v1  Mdo-Mir-214-v1  Mml-Mir-214-v1  Mmr-Mir-214-v1  Mmu-Mir-214-v1  Mun-Mir-214  Oan-Mir-214-v1  Ocu-Mir-214-v1  Pab-Mir-214  Pbv-Mir-214-v1  Sha-Mir-214-v1  Spt-Mir-214  Sto-Mir-214-v1  Tgu-Mir-214-v1  Xtr-Mir-214-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(rn6)		 chr13: 80130934-80130996 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-v1)		 Mir-199-P1-v1 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P1-v2 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P1-v3 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-214-v1 chr13: 80130934-80130996 [+] UCSC Ensembl
Mir-214-v2 chr13: 80130934-80130996 [+] UCSC Ensembl
Variant

Rno-Mir-214-v1
Seed CAGCAGG
Precursor
(pre-Mir +30nt flank)		 
GGUCCUGGAUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGUCCUGGAUGGACAGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCAACAGUAAGUCCGACC^          U          CAC          UCCACUCG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-214-v1_5p*
mirBase accessionMIMAT0017159
Sequence 
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
Proposed targets TargetScanVert: rno-miR-214-5p
miRDB: MIMAT0017159
Mature sequence

Rno-Mir-214-v1_3p
mirBase accessionMIMAT0000885
Sequence 
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence
Proposed targets microrna.org: MIMAT0000885
TargetScanVert: rno-miR-214-3p
miRDB: MIMAT0000885
Variant

Rno-Mir-214-v2
Seed ACAGCAG
Precursor
(pre-Mir +30nt flank)		 
GGUCCUGGAUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGUCCUGGAUGGACAGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCAACAGUAAGUCCGACC^          U          CAC           CCACUCG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-214-v2_5p*
mirBase accessionMIMAT0017159
Sequence 
0- UGCCUGUCUACACUUGCUGUGCA -23
Get sequence
Proposed targets TargetScanVert: rno-miR-214-5p
miRDB: MIMAT0017159
Mature sequence

Rno-Mir-214-v2_3p
mirBase accessionMIMAT0000885
Sequence 
40- UACAGCAGGCACAGACAGGCAGU -63
Get sequence
Proposed targets microrna.org: MIMAT0000885
TargetScanVert: rno-miR-214-3p
miRDB: MIMAT0000885