MirGeneDB

MirGeneDB ID

Rno-Mir-214-v1

Family name MIR-214 (all species)
Seed CAGCAGG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-214
Paralogues Rno-Mir-214-v2 
Orthologues Aca-Mir-214-v1  Ami-Mir-214-v1  Bta-Mir-214-v1  Cfa-Mir-214-v1  Cli-Mir-214-v1  Cpi-Mir-214-v1  Cpo-Mir-214-v1  Dno-Mir-214-v1  Dre-Mir-214-v1  Ete-Mir-214-v1  Gga-Mir-214-v1  Hsa-Mir-214-v1  Mdo-Mir-214-v1  Mml-Mir-214-v1  Mmu-Mir-214-v1  Oan-Mir-214-v1  Ocu-Mir-214-v1  Sha-Mir-214-v1  Sto-Mir-214-v1  Tgu-Mir-214-v1  Xtr-Mir-214-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(rn6)
chr13: 80130934-80130996 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-214-v1)
Mir-199-P3-v1 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P3-v2 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P3-v3 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-214-v1 chr13: 80130934-80130996 [+] UCSC Ensembl
Mir-214-v2 chr13: 80130934-80130996 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCCUGGAUGGACAGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGUCCUGGAUGGACAGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACAC GACGGACAGA   GGACGACAUG        C
ACCAACAGUAAGUCCGACC^          U          CAC          UCCACUCG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-214-v1_5p*

MirBase accessionMIMAT0017159
Sequence
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
Validated targets TargetScanVert: rno-miR-214-5p
miRDB: MIMAT0017159
Mature sequence

Rno-Mir-214-v1_3p

MirBase accessionMIMAT0000885
Sequence
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence
Validated targets microrna.org: MIMAT0000885
TargetScanVert: rno-miR-214-3p
miRDB: MIMAT0000885