MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-199-P1

Family name MIR-199 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-199a
Paralogues Rno-Mir-199-P2-v1 
Orthologues Aca-Mir-199-P1-v1  Ami-Mir-199-P1-v1  Bta-Mir-199-P1-v1  Cfa-Mir-199-P1-v1  Cja-Mir-199-P1-v1  Cli-Mir-199-P1-v1  Cmi-Mir-199-P1-v1  Cpi-Mir-199-P1-v1  Cpo-Mir-199-P1-v1  Dno-Mir-199-P1-v1  Dre-Mir-199-P1a-v1  Eca-Mir-199-P1-v1  Ete-Mir-199-P1-v1  Gga-Mir-199-P1-v1  Gja-Mir-199-P1-v1  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1b-v1  Hsa-Mir-199-P1-v1  Laf-Mir-199-P1-v1  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mdo-Mir-199-P1-v1  Mml-Mir-199-P1-v1  Mmr-Mir-199-P1-v1  Mmu-Mir-199-P1-v1  Mun-Mir-199-P1-v1  Neu-Mir-199-P1-v1  Oan-Mir-199-P1-v1  Ocu-Mir-199-P1-v1  Pab-Mir-199-P1-v1  Pbv-Mir-199-P1-v1  Pma-Mir-199-o1  Sha-Mir-199-P1-v1  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Tgu-Mir-199-P1-v1  Tni-Mir-199-P1b-v1  Xla-Mir-199-P1c-v1  Xla-Mir-199-P1d-v1  Xtr-Mir-199-P1-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr13: 80125517-80125577 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1-v1)		 Mir-199-P1-v1 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P1-v2 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-199-P1-v3 chr13: 80125517-80125577 [+] UCSC Ensembl
Mir-214-v1 chr13: 80130934-80130996 [+] UCSC Ensembl
Mir-214-v2 chr13: 80130934-80130996 [+] UCSC Ensembl
Variant

Rno-Mir-199-P1-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGCCAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   U AGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU C      A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA G      U
CAGGUACCGCAACGACCG  A^    U   AUU       C        -   U UUGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-199-P1-v1_5p*
mirBase accessionMIMAT0000872
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Proposed targets microrna.org: MIMAT0000872
TargetScanVert: rno-miR-199a-5p
miRDB: MIMAT0000872
Mature sequence

Rno-Mir-199-P1-v1_3p
mirBase accessionMIMAT0004738
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0004738
TargetScanVert: rno-miR-199a-3p
miRDB: MIMAT0004738
Variant

Rno-Mir-199-P1-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGCCAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   U  GGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU CA     A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA GU     U
CAGGUACCGCAACGACCG  A^    U   AUU       C        -   U  UGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-199-P1-v2_5p*
mirBase accessionMIMAT0000872
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Proposed targets microrna.org: MIMAT0000872
TargetScanVert: rno-miR-199a-5p
miRDB: MIMAT0000872
Mature sequence

Rno-Mir-199-P1-v2_3p
mirBase accessionMIMAT0004738
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0004738
TargetScanVert: rno-miR-199a-3p
miRDB: MIMAT0004738
Variant

Rno-Mir-199-P1-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGCCAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   UCAGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU        A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA        U
CAGGUACCGCAACGACCG  A^    U   AUU       C        -   UGUUGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-199-P1-v3_5p*
mirBase accessionMIMAT0000872
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Proposed targets microrna.org: MIMAT0000872
TargetScanVert: rno-miR-199a-5p
miRDB: MIMAT0000872
Mature sequence

Rno-Mir-199-P1-v3_3p
mirBase accessionMIMAT0004738
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0004738
TargetScanVert: rno-miR-199a-3p
miRDB: MIMAT0004738